Pedobacter gandavensis: QG516_08760
Help
Entry
QG516_08760 CDS
T09013
Name
(GenBank) bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase
KO
K01798
Alr-MurF fusion protein [EC:
5.1.1.1
6.3.2.10
]
Organism
pgj
Pedobacter gandavensis
Pathway
pgj00300
Lysine biosynthesis
pgj00470
D-Amino acid metabolism
pgj00550
Peptidoglycan biosynthesis
pgj01100
Metabolic pathways
pgj01502
Vancomycin resistance
Brite
KEGG Orthology (KO) [BR:
pgj00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
QG516_08760
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
QG516_08760
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
QG516_08760
09160 Human Diseases
09175 Drug resistance: antimicrobial
01502 Vancomycin resistance
QG516_08760
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
pgj01011
]
QG516_08760
Enzymes [BR:
pgj01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.1 alanine racemase
QG516_08760
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.10 UDP-N-acetylmuramoyl-tripeptide---D-alanyl-D-alanine ligase
QG516_08760
Peptidoglycan biosynthesis and degradation proteins [BR:
pgj01011
]
Precursor biosynthesis
Amino acid ligase
QG516_08760
Racemase
QG516_08760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ala_racemase_N
Ala_racemase_C
Mur_ligase_M
Mur_ligase_C
Motif
Other DBs
NCBI-ProteinID:
WGQ11740
LinkDB
All DBs
Position
complement(2130007..2132466)
Genome browser
AA seq
819 aa
AA seq
DB search
MSSTTYTIDHFAEILHAKAFIPQPELIVTRLVIDSRTVIDPESSLFFALQAKRDGHEYLK
EAYANGIRCFVISNEQYFNIFPDANMLLVENVGLALQTLAIAHRNQYDLKVLAITGSNGK
TIVKEWLYQLLAADYNIIRSPKSFNSQIGVPLSVWNIREEHTLGIFEAGISKENEMEALQ
RIIQPTIGVLTNIGEAHAEGFPSQKVKLLEKLKLFKAAELFIYSPEYTSGIPIQELPGQR
KFSWSLSQKADLQISFVEPIEDKTYIRALYKAAEIECLIPFSDRASVENGIICWATLLSM
GYTPEEADARLERLNRVGMRLELKNGINQCSVIDDSYIADIPSLAIALDFLNLQNQHPKK
TLILSDLHETGKKESLLYKEIADLLKQKNLQRLIGIGPNISSMASLFDLEASFFESTQDF
IDHFPAVHFYDETILVKGARKFEFERISKLIAQKVHDTVLEIDLNGLAGNLQFYRSKLQP
GVKIMAMVKAFSYGSGSFEIANVLQYHKVDYLAVAYTDEGVALRKGGITMPIMVMSPEPS
AFDAIVKYKLEPEIYNLDILNSFLSFLHFEIRDYPVHLKIDTGMHRLGFEENEVDELLQI
LQGTKKLKVASAFSHLVGSDEIQHDEFTKHQIERFKSMAQQIAEGLDYKFIWHISNTSGI
SRHPEAQFDMVRLGIGLYGHDSGLNHNKGLQTVAVLKTTITQVKKLKPNETVGYGRQGLL
PDGGTIATVKIGYADGYTRRFGNGVGKMLVNGQLVPTVGVICMDMCMLDVTGLDVKTGDE
VIVFNGKLTVAMLAEQIGTIPYEILTNISQRVKRIYFYE
NT seq
2460 nt
NT seq
+upstream
nt +downstream
nt
atgagcagtactacctatactattgaccattttgcggaaattcttcatgcaaaagctttt
attcctcagccggaactgatcgttaccagactggtaatcgatagcagaacggtaattgac
cctgaaagctctttattttttgctttgcaggcaaagcgtgatggtcatgagtatctgaaa
gaggcttatgctaacggaatccgttgttttgtgatcagtaacgaacagtattttaatatt
tttccggatgcaaacatgctgctggttgaaaatgtgggcttggctttacagacattggcc
attgctcatcgcaatcaatacgacttaaaagtactggccattaccggaagcaatgggaaa
actattgtcaaagaatggctttatcagcttttagccgctgattacaatattattcgcagt
cctaaaagctttaactctcagatcggagtaccgctttcggtatggaatatccgggaggaa
catacacttgggattttcgaggccggaatctccaaggaaaatgaaatggaagcactccaa
cgcattatccaaccaacaattggggtattaaccaacataggggaggcacatgccgagggt
tttccttcccagaaggtgaaattgctggagaaattaaaactatttaaagccgcggaacta
tttatttattccccagaatataccagcggaattccgattcaggaacttcctggacaaagg
aaattctcctggagcttaagccaaaaagcagatctgcagatttctttcgtggagccaatt
gaagacaaaacttatattcgtgcactctataaagctgcggaaatagaatgtctgatcccg
tttagcgatagggcttctgttgagaatggcattatttgctgggccaccttactttcaatg
ggctatacaccagaagaagcggatgcgcgcctcgagagattaaatcgggtagggatgagg
ctggaattaaaaaacggcatcaaccaatgttccgtaattgatgattcttacattgccgat
atcccttcacttgcgatagcacttgattttctaaaccttcaaaatcagcaccctaagaaa
acattaatcctatccgatttacatgaaaccgggaagaaggaaagcctgctgtataaagaa
attgcggacctgctcaaacagaaaaatctgcagcgattgattgggattggtcctaatatc
tcttctatggcctccttgtttgacttggaagcctcattctttgaaagtacccaggatttt
atagatcattttccagcggtacatttttacgatgaaaccatactggtaaagggagccaga
aagtttgaatttgagcgcattagtaagctgattgcccagaaagttcatgatacggtattg
gaaatagacctgaacgggcttgccggaaatctacagttctataggagtaagctgcagcct
ggcgtaaaaatcatggctatggtgaaagcattttcgtacggaagcggcagctttgaaatt
gccaatgtattacaataccataaagttgattacctggctgtagcctatacagacgaaggt
gtggccttaagaaaaggtgggattacgatgccgattatggtgatgagtcctgagccttct
gcatttgatgctattgtgaaatataaattggaaccggaaatttataacctggatatcttg
aatagcttcttgagcttccttcattttgaaatcagggattatccggtacatcttaaaatt
gatactggaatgcaccggttgggattcgaagaaaatgaagttgatgagttattgcaaatc
cttcagggtactaaaaaactcaaagtggcttccgctttttctcatttggtaggcagtgat
gaaatccagcacgatgagtttacgaaacatcaaattgaaaggtttaagtctatggcgcag
cagatagccgagggactcgattataaatttatctggcacatctcgaatacttctggcatc
tcccgtcatccggaagcccagtttgatatggtacgtttaggtatcggtttatatggacat
gatagtgggttaaaccacaataaaggactgcaaaccgtagccgtattgaaaacaaccatc
actcaggtaaagaaactgaagccaaatgaaactgttggttacggccgacaagggctttta
cctgacggaggaacgattgcaacagtcaaaatcggttatgctgatggctataccagaagg
tttggaaacggggtcggaaagatgctggttaatggtcaattggtgccaaccgttggtgtc
atctgcatggatatgtgtatgttggatgtaacaggattagatgttaaaaccggcgatgaa
gtgatcgtttttaatggaaagctgactgtagcgatgcttgctgagcagatcggaaccatc
ccgtatgagattttaacgaatatttcacaaagagttaaacggatttatttttatgagtag
DBGET
integrated database retrieval system
