Pedobacter gandavensis: QG516_09780
Help
Entry
QG516_09780 CDS
T09013
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pgj
Pedobacter gandavensis
Pathway
pgj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QG516_09780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgj03019
]
QG516_09780
Enzymes [BR:
pgj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
QG516_09780
Messenger RNA biogenesis [BR:
pgj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QG516_09780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Motif
Other DBs
NCBI-ProteinID:
WGQ11926
LinkDB
All DBs
Position
complement(2349141..2350472)
Genome browser
AA seq
443 aa
AA seq
DB search
MPKTFEEFNLNRQILNAVADAGFTVATPIQEKSIAPVLSGQDIFGIAETGTGKTAAYVLP
ILMQLKYAQGDAPRALILAPTRELAMQITEHVKIFSKYTDLRTVVVFGGIGPKTQIEQIK
AGVDIIVATPGRFLDIYLAGHINTQYLKFLVLDEADKMMDMGFIGSIHRILEVVPRRRQN
LLFSATMSDLVQKIAGDFLKHPTIIEVGLQATPAATVTQKLYEVPNFKTKINLLQHLLKN
DEEFKRLIIFCKTKTVADNIFSFIVRRFGEDAVRVIHANKGQNTRINSINSFKEGNIRVL
VATDVASRGIDVSEVSHVINFDVPIIIEDYVHRIGRTGRAYAKGDALTFATPAEKYYIEK
IEKLIRQQIPVLPLPEEIFVEETPYEERQAIARAIDDQKRKDDPEFKGAFHEKKHAAAIA
ASEREKMKNKTPAWKSKKFKNKK
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaaacatttgaagagtttaaccttaatcgacagattttaaatgctgtagctgat
gcagggtttactgttgccaccccaatacaagaaaaatcaatagcacctgtcctgtcagga
caggatatattcggcattgccgagactggaaccggaaaaacagcagcttatgttttaccg
atcctgatgcaattaaaatatgctcagggtgatgcgccaagagccttgatccttgcacca
accagagagttggcgatgcagatcactgaacatgttaaaattttctctaaatatacagac
ctacgtaccgttgttgttttcggtggtattggtccaaaaacacaaatcgaacagattaaa
gcaggtgtagacatcattgtcgctacgccgggaagatttttagacatttatctggccgga
cacatcaatacacagtaccttaagtttttggtcctggatgaagcggataaaatgatggat
atgggcttcattggctctattcaccgtattttagaagtggtaccccgccgtcgtcagaac
ttgttgttctctgcaaccatgagtgacctggtacagaaaattgcgggagacttcctgaaa
caccccactattattgaagtaggcttacaagctactcctgcagcaacagtgacgcagaag
ctgtatgaagtgcccaatttcaaaacaaagatcaatttattacaacacctgctgaaaaat
gatgaagagtttaaaagactcatcattttttgtaaaaccaagacggttgccgataatatt
tttagttttatcgtgcgcaggttcggtgaagatgccgtaagggtaattcatgccaataaa
ggccagaacacgagaatcaactctatcaatagctttaaagaaggaaatatcagggtattg
gtggctacagatgtggcttccagagggattgacgtttctgaagtgagtcatgtgatcaac
ttcgatgtaccgatcattattgaagattatgtacaccgtatcggccgtacgggtagggct
tatgccaagggggatgccttgactttcgctacgcctgcagaaaaatattacattgagaaa
atagagaagttgatcagacaacagattcctgtgctacctttgccggaagaaattttcgta
gaagaaactccttatgaagaacgtcaggctattgccagagcaattgacgaccagaaacgt
aaggatgatcctgagttcaaaggagctttccatgagaagaagcatgccgcggcaattgca
gcttcagaaagagagaaaatgaaaaataaaactcctgcctggaagtctaagaaattcaaa
aataaaaagtaa
DBGET
integrated database retrieval system
