Pedobacter gandavensis: QG516_11570
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Entry
QG516_11570 CDS
T09013
Symbol
uvrA
Name
(GenBank) excinuclease ABC subunit UvrA
KO
K03701
excinuclease ABC subunit A
Organism
pgj
Pedobacter gandavensis
Pathway
pgj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pgj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
QG516_11570 (uvrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pgj03400
]
QG516_11570 (uvrA)
DNA repair and recombination proteins [BR:
pgj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QG516_11570 (uvrA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
QG516_11570 (uvrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
UvrA_DNA-bind
SMC_N
UvrA_inter
AAA_21
nSTAND1
AAA_16
AAA_29
nSTAND3
RsgA_GTPase
DnaJ_CXXCXGXG
AAA_15
Viral_helicase1
AAA_23
cobW
NACHT
Motif
Other DBs
NCBI-ProteinID:
WGQ12275
LinkDB
All DBs
Position
complement(2768055..2770856)
Genome browser
AA seq
933 aa
AA seq
DB search
MNNEIDKDPHQHIIIKGARVHNLKNIDVAIPKNKLVVITGMSGSGKSSLAFDTLYAEGQR
RYVESLSSYARQFMGRMNKPDVDYIKGIAPAIAIEQKVITSNPRSTVGTSTEIYDYLKLL
FSRIGKTFSPVSGEIVKKDTVSTVVDFISGLEPESVVTIFCPLFPHNNRSIKEELAVLLQ
KGFLRILYKGEILKIEGILEDTSFEDFELSDADTVRILIDRIVVNTDEETLSRVADSVQT
GFFEGKGDLYVEHDGKSNHFCDRFELDGIRFDEPTPNFFSFNNPYGACKKCEGYGNVIGI
DEDLVIPDKSKSLYDNAIAPWRGEKMREWLNKLIKNADKFNFPIHRPFNELTEEQQRLIW
TGNKYFAGLDAFFKELEEQTFKIQYRVMLSRYRGKTVCPDCKGSRLRKDASYVKINGKSI
IDVVLMPLETILDFFNHLKLSDNDTKIAKRLLAEISSRVLFLNNVGLGYLTLNRLSNTLS
GGESQRINLATSLGSSLVGSIYVLDEPSIGLHPRDTNKLIEVLISLRNVGNTVLVVEHEE
EMMKAADHIIDIGPEAGTHGGHLVFSGTYKEIIKDKNSLTGRYLSGAEKIAIPTMRRAWK
DHVLIKGARENNLKNIDVKFPLGVFTVVSGVSGSGKTSLIKKILYPALQKAIGNYAGEQT
GAYDGIYGDYELVSQVEMVDQNPIGRSSRSNPVTYVKAWDDVRALFSALPASKAAGLKPA
AFSFNVEGGRCDVCQGEGEVKIEMQFMADIYLPCEACGGRRFKQQVLDITYNDKNVADIL
DMTIDEAVGFFKGEPKILTKLQPLVDVGLGYVHLGQSSNTLSGGEAQRIKLASFLIKGNN
ANKTLFIFDEPTTGLHFHDIKKLLIALNTLIEQGNTILVIEHNMDMIKSADWIIDIGPEG
GDKGGHVVFEGTPEDLVSANSSYTAKYLSAHMK
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atgaataacgaaatcgataaagatccacatcaacatataatcataaagggtgccagagtc
cataacctgaagaatatagacgtcgcaatccctaaaaacaaactggtggtcatcaccgga
atgtcgggctcagggaagtcatccctggcttttgatacgctatatgccgaaggccaaaga
cgttatgtagaaagtctttcctcttatgcccgccaatttatgggtagaatgaacaaaccg
gatgtagattatattaaagggatcgcaccggcaattgcgattgagcaaaaggtgatcact
tcaaatccgaggtctacagtaggtacttctacagaaatttacgactacctgaagttattg
ttttccagaataggcaaaaccttttcaccggtatcgggcgaaatcgtgaaaaaagatacg
gtgagcacagtggtggattttatttctggtttggagccggaaagcgtagtcacgattttc
tgccccttatttccgcacaacaacaggtctattaaagaagaattggcggtattactgcaa
aaaggttttcttagaatcctttataaaggagagattttgaaaatagaaggcattcttgag
gatacttcatttgaagattttgaattgtcggatgccgatacggtgcgaattctgattgat
cggattgtggtcaataccgatgaggagaccctaagtcgcgtagcggattccgtgcaaacc
ggttttttcgaaggaaaaggtgatttatacgtagaacatgatggcaaatcgaatcatttc
tgtgatcgttttgaactggatggcattcgtttcgatgagccaactccaaatttcttcagt
ttcaacaacccttatggtgcctgtaaaaaatgcgaaggctacggaaatgtaattggaatt
gacgaagatctcgtgattcctgacaagagtaaaagcttatatgacaatgcaatcgctcca
tggcgaggagaaaaaatgcgcgaatggctgaataagctcatcaagaacgcagataaattt
aacttccctattcaccgtccttttaatgagcttactgaagagcagcaaaggttgatctgg
actggaaataagtattttgctggattagatgcctttttcaaggaattggaagagcagacc
tttaaaattcaataccgggtgatgctgtccagatatcgtggaaaaaccgtttgtcccgat
tgtaagggatcaagattacgcaaggatgcttcctatgtgaagatcaacggcaagtcgatt
attgatgtagttttgatgcctttggaaactattcttgattttttcaatcatttgaagcta
tctgataatgatacaaaaattgcaaagcgactattggcagaaatcagcagtcgcgtactg
ttcctaaataacgtagggttaggctatctgaccttaaaccgcttatctaataccttatcg
ggtggagaatcgcaaagaattaacctggccacttccttaggaagtagtttggtcggttct
atttatgttttggatgagccaagtatcggtttacacccaagagataccaataaactgatt
gaagtactcatctctttgagaaacgttggaaatacggttttggtggtcgagcatgaagag
gaaatgatgaaagctgcagaccatattatagatataggtcctgaagcgggaactcatggt
ggtcacctggtgttcagcgggacttataaagaaattataaaagataaaaacagccttact
ggacgttacctttccggagctgaaaagattgcaattcctacgatgagaagggcgtggaaa
gaccatgtgctgattaaaggtgccagggaaaacaacctaaaaaatattgatgtgaaattt
cctttaggtgttttcacagtagtgagtggtgtttctggaagtggaaaaaccagtttaatc
aaaaagatcttatatcctgctttacaaaaggcgataggtaactatgctggtgagcaaacc
ggtgcttatgatgggatttacggggattatgaattggtgagtcaggtagaaatggtggat
cagaatccaattggaagatcatccagatccaatcctgtaacctatgtaaaggcctgggat
gatgtaagggcattgttttcagctttacctgcttcaaaagctgctggattaaagcctgcg
gcattctcctttaacgtagaaggtggacgctgtgatgtttgtcagggggaaggcgaagtg
aaaattgaaatgcaattcatggccgacatttatcttccttgcgaagcttgtggcggaaga
aggtttaaacaacaggttctcgacatcacttataatgataaaaatgtagcggatatcctg
gatatgaccattgatgaagccgttgggtttttcaagggagaaccaaaaatattaactaaa
ctacagcccttggtagatgtgggcctaggttatgtacaccttggtcagtcttcaaatacc
ttatctggcggagaagcacagcgtatcaaactcgcttcatttttgatcaaaggaaacaat
gcaaacaagaccttgttcatctttgatgaaccaacaactggtttacatttccacgacatc
aagaaactgctgatcgctttgaatactttgattgaacaaggaaatacaattctggtgatt
gagcacaatatggacatgattaaatctgcggattggatcattgacattggtccggaaggt
ggcgataaaggtggtcatgttgtttttgaaggtacgccagaggatttggtgtccgctaat
tcatcatatactgcgaagtatttatcagcacacatgaaataa
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