Pedobacter gandavensis: QG516_14330
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Entry
QG516_14330 CDS
T09013
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
pgj
Pedobacter gandavensis
Pathway
pgj03030
DNA replication
pgj03410
Base excision repair
pgj03420
Nucleotide excision repair
pgj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pgj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QG516_14330 (polA)
03410 Base excision repair
QG516_14330 (polA)
03420 Nucleotide excision repair
QG516_14330 (polA)
03440 Homologous recombination
QG516_14330 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pgj03032
]
QG516_14330 (polA)
03400 DNA repair and recombination proteins [BR:
pgj03400
]
QG516_14330 (polA)
Enzymes [BR:
pgj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
QG516_14330 (polA)
DNA replication proteins [BR:
pgj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QG516_14330 (polA)
DNA repair and recombination proteins [BR:
pgj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
QG516_14330 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QG516_14330 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH_2
DUF3913
HHH_5
DUF3920
WHD_BrxR
Motif
Other DBs
NCBI-ProteinID:
WGQ07740
LinkDB
All DBs
Position
complement(3420012..3422825)
Genome browser
AA seq
937 aa
AA seq
DB search
MKKLFLLDGMALIYRAHFALSKNPRFTSTGINTSAVMGFANTLMEVLKKEKPSHIAVVFD
TEAPTERHTDFEAYKAHRQAMPEDLSAALPYVFKLIEGFKIPVITKDGFEADDIIGTLAK
EGEKQGFTVYCMTPDKDFAQLVSENIFIYKPARMGNEMEIMGVDEVKAKWEIEDVKQVID
ILGLWGDAVDNIPGIPGIGEKTAKSLIQKYGSMENIIANSHELKGKQRENVEAYAEQGLL
SKKLATIILDVPVEFNADQLVIESPSRELLEPLFAELEFRTIGKRVFGEEFNVNEAKASV
SQQIDLFGSPVDQPAGKTGTFVSAPTFSEETHASKTIENTTHNYQLLATPDLRKSLIAQL
EKEASICFDTETTGTDANLADLVGISFSTKPGEGYYIPLSADRAEASAILEEFRGVLENE
NIEKIGQNIKYDILIMKWYGIHIKGKLFDTMLAHYLIDPDTRHNMDVLSENYLGYTPISI
TKLIGAKGKNQGNMRDVPVEQVVDYAAEDADVTLQLANVFRPMLKELNVEELARDVENPL
VYVLAAIEKEGVRIDVDTLNNYSKELEIDIRKFEQNVFEKCGVTFNLASPKQLGEVLFDK
LQLDPKAKKTKTGQYQTGEDVLLALASKSDIVKDILDFRQLQKLKSTYVDALPLLVNPKT
GRVHTSYNQAVAATGRLSSNNPNLQNIPIRSDRGREVRKAFIPRDENHILLSADYSQIEL
RIIAEISKEENMLDAFNKGIDIHTATAARVYGITIEEVTSDQRRNAKAVNFGIIYGQSAF
GLSQNLGIPRKEAAAIIEQYFEQYPGIQRYMADTMNFARENGFVETILGRRRYLRDINSA
NQTVRGFAERNAINAPIQGSAADMIKVAMLNIHKDIQDQGLQSKMTMQVHDELVFDVLKT
EVEAMKKIITHRMKTAIKTTVPIEIEIGEGNNWLEAH
NT seq
2814 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaactttttcttcttgacggcatggcgctcatttacagagcacactttgcattg
agtaaaaacccccggtttacgtccacaggaatcaatacatcggcagtgatgggttttgca
aacaccttaatggaggtgctgaaaaaggaaaaaccaagtcatattgctgtggtttttgat
accgaggctcctacagagagacataccgatttcgaggcgtataaggcgcaccgacaagca
atgccggaagatttgtctgccgctctaccttatgtctttaagctgattgaaggatttaaa
attccagtcattaccaaagacggttttgaagcagatgacatcattggaactttagcaaaa
gaaggcgaaaaacaaggtttcaccgtgtactgtatgactcccgataaagatttcgcccaa
ctggtgtctgaaaatattttcatttacaaacctgctcgtatggggaatgaaatggaaatc
atgggtgttgatgaggtgaaagcgaaatgggaaattgaagatgtaaagcaagtgattgat
atcctcggtctatggggtgatgcagtggataatatcccgggtattccaggcattggagaa
aaaacggcgaaatcattgatccagaaatatggctcaatggaaaacatcatcgcgaattcc
catgagctaaaaggaaaacaacgtgaaaacgtagaggcttatgcagaacaaggtttattg
tctaagaagctggcaaccatcatcctggatgttccggtagaatttaacgcagatcaactg
gtaatagagtctccgagccgtgaattattagagccattatttgcagaactggaattcaga
accatcggtaaacgtgtttttggagaagagtttaatgtgaatgaggcgaaagcatctgtt
tctcagcaaatcgacttatttggcagcccagtggatcagccagcaggtaagaccggcaca
tttgtgtctgctccaaccttctctgaagaaacacatgcgtcaaaaacaatagaaaatacc
acacacaattatcaactgttagctactccggacttgcgcaagtcattgatcgcacagctg
gaaaaggaagcaagcatttgcttcgatacggaaactaccggtacagatgcaaatcttgca
gacttggttggaatttctttcagcaccaaacctggagaaggttattatattcctttgtct
gcagatagagcagaagcatcagcaattctggaagaattcagaggtgttcttgaaaatgaa
aacattgaaaagatcgggcagaacatcaaatatgatattctgatcatgaaatggtatggt
attcatatcaaaggaaaactttttgataccatgctggcgcattacctgattgatccggat
accagacacaacatggacgtcctttctgaaaattacctgggttataccccaatttctatc
acaaaactgataggagcaaaaggaaaaaatcaggggaatatgagagacgtcccagtagag
caagtggtagattatgctgcggaagatgcagatgtgactttgcagctggcgaatgttttc
agaccgatgttaaaggaactgaacgtagaagagctggccagggatgtagaaaatccttta
gtttatgtccttgctgcgattgaaaaagaaggagttagaatcgatgtagatacccttaat
aattattcaaaagaactggaaatcgacatcagaaaatttgagcagaatgttttcgagaag
tgtggcgttacctttaatctcgcttcacctaaacagcttggagaagtacttttcgataaa
ttacagctggatcctaaagctaaaaaaactaaaaccggacagtatcaaaccggagaagat
gtgttattggcactggccagcaaaagtgatattgtaaaagacatccttgatttccgccaa
ttacaaaagctgaaatcgacctatgtagatgccttaccattgttggtaaatccaaaaaca
ggaagggtacataccagctacaatcaggctgtagcggctacaggaaggttaagttctaac
aaccctaacctgcagaacattcctattcgcagtgatcgcggtagagaagttcgtaaagct
tttatcccaagagatgaaaaccacatcttactttctgcggattattctcaaatagagctg
agaattattgccgaaatcagcaaggaagaaaacatgctggacgcctttaataaaggaatt
gacatccatacggcaactgctgcacgtgtatatggcatcaccattgaagaagtaacttca
gatcagcgtcggaatgctaaagcggtaaactttggaattatctacggtcaatctgctttc
ggattgtctcagaaccttggcattccaagaaaagaagccgctgctattattgaacaatat
tttgaacaatatccaggaattcagcgctacatggcagataccatgaacttcgccagagaa
aatggcttcgtagaaaccatcctcggcagaagaaggtacctgagagacattaactctgcc
aatcaaactgtacgcggttttgcagagcgaaatgccatcaatgcgccaatccaaggttct
gcagcagatatgatcaaagtagccatgctaaacatccataaagatattcaggatcagggc
ttgcaatcaaaaatgaccatgcaagtgcatgatgagctagtctttgatgtgttaaaaacg
gaagtggaagccatgaaaaagatcattacccaccgcatgaaaacagcgataaagactact
gtgccgattgaaatagaaatcggagaaggaaacaattggctggaagcacattaa
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