Pedobacter gandavensis: QG516_15960
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Entry
QG516_15960 CDS
T09013
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pgj
Pedobacter gandavensis
Pathway
pgj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QG516_15960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgj03019
]
QG516_15960
Enzymes [BR:
pgj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
QG516_15960
Messenger RNA biogenesis [BR:
pgj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QG516_15960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
AAA_19
CMS1
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
WGQ08037
LinkDB
All DBs
Position
complement(3815185..3816564)
Genome browser
AA seq
459 aa
AA seq
DB search
MDFKDFNFNPDLLEGLLAMGFRNATPIQTAAIPLILDKKDLIACAQTGTGKTGAYLLPIM
NMISMTENRHNNTLILAPTRELAQQIDLQVEALSYFTNISSLTVYGGGDGIAYEQQKRSM
REGVDIIIATPGRLISHLSSGLLKLDQLQHLVLDEADRMLDMGFYDDIMRIVSFLPKKRQ
TVLFSATMPPKIRTLAGRLLHNPEQISIAISKPAAGINQQAYMVHDSQKVKLLTELMKNV
EFPSILIFASTKEKVKNLGKVFRGLGFKAEAFHSDLGQKEREAILSEFKNKRVPVLIGTD
VLSRGIDVEGISLVINFDVPHDPEDYIHRIGRTARAATTGTAITLVNEKDKRKFANIEKL
IDKTIDRMPLPEHFGAVPADAPESPSEKKYDRKKPQRKVWGKKPKGKSSAAPRNAAEANQ
TAARTVDVNTGKTHSDTIKTTSTAGTAKPASGDASPTKE
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
ttggatttcaaagattttaattttaaccctgatttattagagggtttattagccatgggt
tttcgcaatgcgactcccatccaaacagcagctattccgctaattctagataaaaaagat
ttaatcgcctgcgcacaaacaggtaccgggaaaactggtgcttacttgctaccgatcatg
aacatgatcagcatgacggaaaatcgccataacaataccttgatattggcgcctacacgt
gagctggcacagcaaatagatttacaggtagaagcactttcctatttcacgaacatcagt
tccttaacggtttatggtggtggagatgggatcgcttatgagcagcaaaaacgctctatg
cgcgaaggtgtagacatcattattgccactccgggacgcttaatctcccacctttcctca
ggattgttgaaactggaccagttgcagcacctggtactggatgaagcagatagaatgctg
gacatgggtttttatgatgacatcatgcgcatcgtcagtttccttcccaagaaaagacaa
acggtattgttctccgcaactatgcctcctaaaataagaacgcttgccggcagattgctc
cacaatccggaacaaatcagcattgctatttctaaacccgcagcgggaattaaccagcag
gcctatatggttcatgattctcagaaagtaaaattactgacggaactgatgaaaaatgta
gagtttccaagcatcttgatctttgcttctacgaaagaaaaagtaaagaatctgggtaag
gttttccgtggattaggattcaaagcagaagcattccattcggatttaggtcagaaagaa
cgtgaagcgatattatcagagttcaagaataaacgggttccggtattgattggaacagac
gttttatcgaggggaattgatgtggaaggaattagtttggtgatcaattttgatgtacct
catgatccggaagattatatccacaggatcggaagaacagcaagagcggccactactggt
accgcaattacattggtgaatgaaaaggacaagcgcaaatttgcgaatattgaaaaactg
attgacaagacaattgacagaatgccgcttcctgaacattttggagcagttccggcagat
gccccagaaagcccatcagagaaaaagtatgaccgcaagaaaccgcagcgtaaagtttgg
ggcaaaaaacctaaaggaaaaagttccgctgcgccaaggaatgctgctgaggcaaaccaa
acggctgcaagaactgttgatgtaaatacaggtaaaactcattctgacaccattaaaaca
acaagtacggccggtactgcaaagcctgcttcaggtgatgccagtccgacaaaagaatag
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