Pedobacter gandavensis: QG516_17145
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Entry
QG516_17145 CDS
T09013
Name
(GenBank) pseudouridine synthase
KO
K06178
23S rRNA pseudouridine2605 synthase [EC:
5.4.99.22
]
Organism
pgj
Pedobacter gandavensis
Brite
KEGG Orthology (KO) [BR:
pgj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pgj03009
]
QG516_17145
Enzymes [BR:
pgj01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.22 23S rRNA pseudouridine2605 synthase
QG516_17145
Ribosome biogenesis [BR:
pgj03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
QG516_17145
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_2
S4
SYY_C-terminal
Motif
Other DBs
NCBI-ProteinID:
WGQ08264
LinkDB
All DBs
Position
complement(4087661..4089229)
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AA seq
522 aa
AA seq
DB search
MMKDNNRNSRDDKSKSGNRSSTGQNRSGGDSSYRDKSKFDDKEGKDKKFGGPRDFNPREG
GSRDFKPREGGSRDYKPREGGSRDFKPREGGSRDFKPREGGSRDFKPREGGSRDFKPREG
GSRDFKPREGGSRDFKPREGGSRDFKPREGGSRDFKPREGGSRDFKPREGGSRDFKPREG
GSRDFKPREGSSRPHSAGSSRDVPPSDKTRSYIKKDHFGKGDQPFRKFDDNKGGASRSTD
SRPFRKREDEGGSRDFKPRDARPDREEGSNTTMRSRKAPFVKDDGLIRLNRYIANSGICS
RRKADELIAAGVVSVNGEAISELGHKIDPAKDEIRYNGELLKREKKIYVLLNKPKDYITT
TDDPQERRTVMQLVEKASRERIYPVGRLDRNTTGLLLMTNDGDLADKLSHPRNGITKIYH
VELSKTLSQGDFNKIQFGLELEDGLIKPDNISYVAGGSKKEIGIQIHSGKNRIVRRIFEH
LGYDVVKLDRVVYGNLTKKDLPRGRWRYLEEHELIQIKHLIK
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgatgaaagacaacaacaggaacagtcgggatgacaagtccaaatcgggcaacagaagt
tcaacaggccaaaatcgtagcggaggagactcttcttacagagataaaagcaagtttgac
gacaaagaggggaaagataaaaaatttggtggcccgagagattttaacccaagagaaggt
ggatcaagagacttcaaacctcgtgaaggcggatcaagggattacaaaccacgcgaaggt
ggttcaagagatttcaaaccacgtgaaggtggttcaagagatttcaaaccacgcgaaggt
ggttcaagagatttcaaaccacgtgaaggcggttcaagagatttcaaaccacgtgaaggt
ggatcaagagatttcaaaccacgtgaaggcggttcaagagatttcaaaccacgtgaaggc
ggttcaagagatttcaaaccacgcgaaggcggttcaagagatttcaaaccacgtgaaggt
ggttcaagagatttcaaaccacgcgaaggcggttcaagagatttcaaaccacgtgaaggt
ggttcaagagatttcaaaccacgtgaaggtagttcaagacctcatagtgcaggtagctca
agagacgtacctccttctgacaaaacacgtagttatataaagaaagatcatttcggaaaa
ggggatcagcctttcaggaaatttgatgataataaaggtggcgcttcaagaagtacggac
agcagaccttttagaaaaagagaagacgaaggtggttcaagagatttcaaacctcgtgat
gcacgtcctgaccgcgaagaaggtagcaataccacaatgcgcagcagaaaagcacctttc
gttaaagatgatggcttaattcgtttaaaccgttacatcgccaattcaggaatttgttcc
cgtcgtaaagcggatgaactgattgctgctggtgtagtatctgtaaatggggaagcaatt
tctgagcttggtcataaaatcgaccctgcgaaagatgaaatccgttataatggtgagttg
ttgaaacgcgaaaagaaaatttacgtgttattaaacaagcctaaagattacattacgact
actgatgatcctcaggaacgtcgtacggtaatgcaattggtagagaaagcaagcagagaa
cgtatttatccggtaggaagattagaccgtaatactacaggtttattattgatgaccaat
gatggcgatcttgctgataaattatctcacccaagaaatggcatcactaaaatctatcat
gtagaattaagtaagactttaagtcagggtgatttcaacaaaatccagttcggattagaa
ttggaagatggtttgatcaaacctgataacatttcttatgtagccggtggtagtaaaaaa
gagatcggtattcagatccacagtggtaaaaatagaatcgtcagaagaatatttgaacac
ttaggttatgatgttgtgaaacttgaccgtgtcgtttacggtaacctgactaaaaaagac
cttcctcgtggaagatggagatatttagaagagcatgaattgattcagatcaagcatctg
atcaagtaa
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