Pedobacter gandavensis: QG516_17625
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Entry
QG516_17625 CDS
T09013
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
pgj
Pedobacter gandavensis
Pathway
pgj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pgj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
QG516_17625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pgj03021
]
QG516_17625
03400 DNA repair and recombination proteins [BR:
pgj03400
]
QG516_17625
Enzymes [BR:
pgj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
QG516_17625
Transcription machinery [BR:
pgj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
QG516_17625
DNA repair and recombination proteins [BR:
pgj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
QG516_17625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
RAD51D_N
HHH_XRCC3_RpoA
HHH_5
Motif
Other DBs
NCBI-ProteinID:
WGQ08356
LinkDB
All DBs
Position
4182270..4183262
Genome browser
AA seq
330 aa
AA seq
DB search
MAILAFQKPDKVIMQKSTDFDGIFEFRPLEPGFGVTIGNALRRILLSSLEGYAITSIRFS
GVSHEFSTMKGVVEDLTEIILNLKQVRFKKVGDSGDSEKVFILVNGQDQFTAGDITKFSN
NFEVLNPDFVICNMEKTVTLEVELTINKGRGYVPAEENKINDAVVGVIAIDSIFTPMKNV
KYSIENYRVEQKTDYEKLILDISTDGSIHPEEALKEAAKILIQHFMLFSDENLVLESQAK
EETKEVDEEILHMRKILKTELVDLDLSVRALNCLKAADIRTLADLVSYDVADMLKFRNFG
KKSLTEIQELVKSKSLSFGMNLSKFKLDEE
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atggcaattttagcatttcagaaacccgataaggtaatcatgcagaaatcaacagatttc
gatggtatatttgaatttcgtcctttagagcccggtttcggtgtaacaattggtaacgcc
ctaagaagaattttactttcttctttagaaggttatgccattacaagtattcgtttttct
ggcgtatctcacgagttttctacaatgaaaggtgttgtagaagatttgacggaaatcatc
cttaacttgaaacaagtacgttttaagaaagttggtgattctggtgattctgaaaaagtt
ttcattttagtaaacgggcaagatcagtttaccgctggagatattacaaaattctctaac
aacttcgaggttcttaaccctgatttcgttatttgtaacatggaaaaaacagtgacttta
gaggtagaattaactatcaataaagggcgcggttatgttccagctgaagaaaataaaatc
aatgatgctgtagttggtgtaatcgcaatcgattcgatttttaccccaatgaaaaatgta
aaatactcgattgaaaattatcgtgttgaacaaaaaacagattatgaaaaattaatatta
gatatctctacagatggatctatccatcctgaagaagcactaaaagaagctgcgaaaatt
ttaatccagcactttatgttgttctctgatgagaatttagtattagaatctcaagctaaa
gaagaaactaaagaagtagatgaggaaattttacatatgcgtaaaatccttaaaactgaa
ttggttgatttagatctttctgtacgtgcattaaactgccttaaagcagctgacatccgt
actttagctgacctggtttcttatgatgttgctgacatgttaaaattcagaaacttcggt
aaaaaatcactaactgagattcaggaattggtgaaatcaaaaagcttatctttcggtatg
aacttatcgaaattcaaacttgacgaagagtaa
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