Pedobacter gandavensis: QG516_19505
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Entry
QG516_19505 CDS
T09013
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pgj
Pedobacter gandavensis
Pathway
pgj03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pgj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
QG516_19505 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pgj03400
]
QG516_19505 (ligD)
Enzymes [BR:
pgj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
QG516_19505 (ligD)
DNA repair and recombination proteins [BR:
pgj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
QG516_19505 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
DNA_ligase_C
Motif
Other DBs
NCBI-ProteinID:
WGQ08701
LinkDB
All DBs
Position
4636037..4638787
Genome browser
AA seq
916 aa
AA seq
DB search
MSLTEYKKKRSFTDTPEPKGGKGTGESLRFVIQKHDASHLHYDFRLEMDGVLKSWAVPKG
PSTDPEIKRLAMRVEDHPYDYRNFEGIIPKGQYGGGTVIVWDEGTYVPFEPETEDLKTQE
KQLLHQLHSGKLKFILSGKKLKGAFALIKAYGKGENSWLLMKLEDKYAKTKDILLKDKSV
ISSKSISQMEKQPDRVYGKTKHPKDKPADPKSEKIKKVLKNEAGSIQPAGRKLLSLVKKG
VKAPFFTKLEPMLATLVDEAFDEPGWLYEIKWDGYRVLAFMQGGNVELKSRNDKPYNERF
YPIYEALKAWGINAVLDGEVVVLNEKGSANFGALQNWRGEADGALRYYVFDLLWYDGYDL
RDLPLRDRKAILAALIPTSSPILLSKDFQTSGIDFLEAAKRAGLEGIMAKRMDSKYHTGN
RTSDWLKIKANHRQEVVIGGYTRNEGSPKPFSSLLVGVFEKGKLNYTGKIGTGFSIKAQK
EMLAQFEPLIVSESPFRAKPDVNKTNPFRHASLNAVATWLKPELICEVSFAEMTADGLMR
HPSFEGMRSDKDPEEVLLEEAADTDKVISKNTMETTKKNVSKKTVKEKSEVRSRAARKGS
EETAFLAPEEETQVKKINGQSLKFTNLSKIYWPVEKVTKRDMINYYHQIAPFILPYLLDR
PQSLNRYPNGITGGSFYQKDVTGKVPEWIKTYLYHAEGDDTDKHFLVGKDEATLLYMASL
GCIELHPWSSTIHKPDHPTWCIIDLDPGKNSFEQVIEAAQVTKEVLDGMGVPSYCKTSGS
TGLHIYIPMANKYTYEQSKEFARIIVTLVNRELPKFTSLERVVAKRRGKMYLDFLQNRPQ
ATIAAPYSLRPKPGATVSMPLHWEEVKNGLQMKDFTIFNAVSRANEMGDIFSPVLGKGID
LLAVIKNNKSEDLLLE
NT seq
2751 nt
NT seq
+upstream
nt +downstream
nt
atgagccttaccgaatacaagaagaaacgttcatttaccgatactcccgaacctaaagga
ggaaaaggaacaggggaaagcctgcgttttgtgatccagaagcatgatgcttcccatctt
cattatgattttcgcttagaaatggatggggtgctgaaaagctgggccgttccaaaaggc
ccctctaccgatcctgaaattaagcgtttggcgatgagggtagaagatcatccttatgat
taccggaatttcgaaggcatcattcctaaaggccagtatggaggtggaaccgtgatcgta
tgggatgaaggaacctacgtgccttttgagccggaaactgaagatttaaaaacgcaggaa
aagcagctgctccatcaattacacagcggaaaactcaaatttatactcagtggcaagaag
ctgaaaggtgcttttgcattgataaaagcttatgggaaaggtgagaacagctggctgctg
atgaaactggaagataagtatgcgaaaacaaaggacatacttttaaaggataagtcggtg
atttccagtaaaagcatttcacaaatggaaaagcagcctgatcgggtatacgggaaaacg
aaacatccgaaagataaacctgcagatcctaaatctgaaaaaataaagaaagtcttaaaa
aatgaagccggcagcatccaacctgccggaagaaaactgctcagtttagtaaaaaaaggg
gttaaagctcctttttttactaagctggagccgatgctggccacattggtagacgaggct
tttgatgaacccggctggctttatgaaattaaatgggacggttatcgcgtcctcgctttt
atgcagggcggaaatgttgaattaaaatcccggaatgataaaccttataatgagagattt
taccctatttatgaggcattaaaagcctggggcatcaacgcggtgctggatggagaagtg
gtggtgttaaatgaaaaaggaagcgcgaattttggggcactgcaaaattggcgtggcgaa
gcggatggagcgttaaggtattatgtttttgacttgctatggtatgatggttatgattta
agggatttacccttaagagatcggaaagcaatccttgcagcgctcattcctacttcatcg
cctattttactcagtaaagattttcaaacttcaggcattgattttttagaggcagctaag
cgtgccggactggagggcattatggcaaaacgaatggatagcaagtaccatactggaaat
cgtacgtcggattggttaaagattaaagccaatcatcgacaagaggtcgtcattggtggt
tacactagaaatgaaggcagtccgaaaccctttagttctctgttggttggggtatttgaa
aaaggaaagttgaactataccggaaagataggtacaggttttagcataaaagctcaaaaa
gaaatgttggcgcagtttgaacccttaatcgtatcggaaagcccttttagggccaagcct
gatgtcaataaaaccaacccttttcgccatgcgtcattaaatgctgttgctacctggtta
aagccagagctgatttgtgaggtcagttttgctgaaatgacagctgatgggctaatgagg
cacccttcttttgaaggaatgcgctccgacaaagatcctgaagaggtattgctggaggag
gcagcggatacggacaaagtgatatctaaaaacacgatggaaacaacgaagaaaaatgta
agcaaaaagacggttaaggaaaaaagcgaagttaggagcagagcagcccgtaaaggatca
gaggaaactgcctttttagctcctgaagaggaaacacaggtgaaaaaaataaatgggcaa
tccctaaaattcacaaacctcagtaaaatatattggcctgtagaaaaggtgactaagcgg
gatatgatcaattattaccatcaaatcgctccatttatattgccttatctgctggaccgg
ccgcaatctttaaatcggtatccgaatgggattaccggagggagtttttaccagaaagat
gtgacaggaaaagtcccggaatggataaagacttatttataccatgcggaaggggatgat
acggacaaacattttttagtagggaaggatgaggcaactttattatatatggcgagttta
gggtgtattgaattacatccctggagcagtacgattcataaaccggatcatccaacctgg
tgtatcatagaccttgaccccggaaaaaattcctttgagcaggtaattgaagctgcacag
gtcactaaagaggtattggatgggatgggagtgccttcttactgtaaaactagcggatct
actggtttacacatttatatcccgatggcgaataaatatacttatgaacagagtaaagaa
tttgcgagaatcatcgttacactggtgaaccgggagttgccaaaatttaccagtctggag
cgggttgtggcaaagcggagggggaaaatgtacctggattttttgcaaaacaggccacag
gcaaccattgcagcaccctattcccttcgtccgaaacctggagcaaccgtgtctatgcct
ttacattgggaggaggtgaaaaatgggttgcaaatgaaagattttaccatttttaatgca
gtaagcagagcgaatgaaatgggagatatcttcagcccggtcttgggaaaaggaatcgac
ctgttggctgtaattaaaaacaataaaagcgaagacctgttattggagtaa
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