Pedobacter gandavensis: QG516_19945
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Entry
QG516_19945 CDS
T09013
Name
(GenBank) DNA-formamidopyrimidine glycosylase family protein
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
pgj
Pedobacter gandavensis
Pathway
pgj03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pgj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
QG516_19945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pgj03400
]
QG516_19945
Enzymes [BR:
pgj01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
QG516_19945
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
QG516_19945
DNA repair and recombination proteins [BR:
pgj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
QG516_19945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
NFACT_N
Ribosomal_S13
Motif
Other DBs
NCBI-ProteinID:
WGQ08787
LinkDB
All DBs
Position
4749431..4750207
Genome browser
AA seq
258 aa
AA seq
DB search
MPELPDLEVFSANLNEAFAGRKLSTVEVPNDKKLNVTPEKLREVLNGQLLKSVTRSGKEL
HFNFEKDVLALHLMLRGQLHFFEEIYAIKYPVIALYFEGDLGLVMSDPQKIATPTLNPAL
AAAPDALDEKVTPEFLKEHLKGKKSAIKGILLDQQQIRGIGNAYADEILWTARISPFSIA
GKIPEEKVNDLHYAIHKVLTDAVKEIRKVHPASITGEFRDFLKVHTQHNPKSPTGAEILI
HKSGARKTYYTAEQQLFN
NT seq
777 nt
NT seq
+upstream
nt +downstream
nt
atgccagaattaccagatttagaagtattcagtgcaaaccttaatgaagcctttgccggt
agaaaattgagtacagtagaagtgcctaatgataaaaaactgaatgtaactcctgaaaaa
ttgagggaggtactgaatggtcagctactgaaatctgtgacccgatccgggaaggaactt
cattttaactttgaaaaagatgtgctggcattacacctcatgttaagggggcaattgcat
ttctttgaagaaatttatgcgattaaatatccggttatagcgctgtattttgagggtgat
ctgggcttagtgatgtcagatccgcaaaagattgcaacaccaaccttgaatcctgcgctt
gcagctgcaccggatgcgttggatgaaaaagtaacaccagagtttttaaaggagcattta
aaaggtaaaaagtcagctattaaagggatattactagaccagcagcaaattagaggaata
ggcaatgcgtatgctgatgagatcttatggacagccaggatttctcccttttctattgcc
ggaaagatccctgaagaaaaggtaaatgatttacattatgccattcataaagtgctgaca
gatgcggtaaaagaaatcagaaaagtacatcctgcaagtataaccggggagttcagagat
tttctaaaagttcatacgcagcacaatcccaaaagtccaactggtgcagagatcctcatt
cataaaagcggcgcgaggaaaacttattatacagcagaacagcagcttttcaattga
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