Pedobacter gandavensis: QG516_20270
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Entry
QG516_20270 CDS
T09013
Name
(GenBank) exodeoxyribonuclease V subunit gamma
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pgj
Pedobacter gandavensis
Pathway
pgj03420
Nucleotide excision repair
pgj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pgj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
QG516_20270
03430 Mismatch repair
QG516_20270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pgj03400
]
QG516_20270
Enzymes [BR:
pgj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
QG516_20270
DNA repair and recombination proteins [BR:
pgj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QG516_20270
MMR (mismatch excision repair)
Other MMR factors
QG516_20270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
PcrA_UvrD_tudor
ResIII
AAA_11
AAA_22
DEAD
DUF7578
Motif
Other DBs
NCBI-ProteinID:
WGQ08851
LinkDB
All DBs
Position
complement(4825959..4828265)
Genome browser
AA seq
768 aa
AA seq
DB search
MDYLAGLNPQQRAAVENTQGPAMIVAGAGSGKTRVITYRVAHLIEKGVDPFNILVLTFTN
KASKDMRERIMKVIGAEAKNIWMGTFHSVFAKILRVEAEKIGYPSSFTIYDTDDSKSLIR
AILREMQLDDKLYNANFVYNRISSAKNNLVSHIEYQENAEIQVEDISNKRPLIGAIYETY
TKRCFKSGAMDFDDLLFKTNVLLKNHPDVLNKYQQKFKYLMVDEYQDTNFSQYTIVKKLA
AAYQNICVVGDDAQSIYAFRGANIQNILNFERDYPDLKVYKLEQNYRSTQNIVEVANSII
ANNKNQLEKNVFSDNEPGDRIRVQRAFTDNEEGKIVAEAIIQERSSKGYNYNDFAILYRT
NAQSRAMEEGLRKLNVPYKIYGGLSFYQRKEIKDLIAYFRLTFNPSDEEAIKRVINYPKR
GLGDTTVEKLLVAADEHNVTMWEVVCNPQQYIAGRIANQLNDFAMMIKSFTVEAKKLDAY
EAALYIAQHSGILKELHSDMTDEGRGRHENIQELLNGIKEFGEREDIEDRSLEVFMQDIA
LLTNDDKSNDKNVDTVSLMTIHSSKGLEFKNVFVVGLEENLFPSQMSLNSRSDLEEERRL
FYVAVTRAEKKLTLTYSTSRYRWGTLTNCEPSRFIEEINARYLEIEVPKSAKPPIGDDSF
SSERRSWTQQRDSFSKPKPAASSTATGTSTAPRPKTSVLPKAHVPTPGFAPDAANLFQNG
MEVEHEKFGFGKIVSLEGSLPDVKATVFFQGLGNKQLLLKFAKLRIVK
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
ttggattatttagcaggattaaacccccaacaacgcgcagcagtagaaaacacccaggga
ccagcaatgattgtcgcaggtgcaggctccggaaaaacacgtgtcattacttacagagta
gctcacctgattgaaaaaggagtagatccattcaatattctggtgcttacttttaccaat
aaagcctctaaagatatgcgcgagcgaatcatgaaagtgattggcgcagaagcaaaaaat
atctggatgggtacttttcactccgtatttgcgaaaatattaagagtagaagcagagaag
atcggttatccttccagtttcaccatctatgatacagacgacagtaaaagtctgatcaga
gcgatactacgcgagatgcagctggacgacaagctttacaatgccaatttcgtatacaac
aggatctcttctgcgaaaaacaacctggtttctcatatcgaataccaggagaatgctgaa
atccaggtggaagacatcagtaataaacgtcctttaatcggagcgatttatgaaacgtat
accaaacgctgcttcaagtcaggtgcaatggattttgacgatttgctgtttaaaaccaat
gtgctgttaaaaaaccatcctgacgtcttaaataaataccagcagaaattcaaatacctg
atggtagatgagtaccaggatactaacttttcccagtacactatcgtgaagaaattggca
gcagcctaccagaatatctgtgtggtaggtgatgatgcacaaagtatctatgctttcagg
ggtgcaaatattcagaacatcctgaattttgaacgcgattacccggatttgaaagtctat
aaactggagcagaattaccgctccacccaaaatattgtagaagttgccaacagcatcatc
gccaacaataaaaaccagttggaaaagaatgtattctctgacaatgagcctggcgacagg
atcagggtacagcgcgcctttaccgacaatgaggaaggtaaaattgtagccgaagccatc
attcaggaacgcagttctaaagggtataactacaatgattttgccatcttataccgtacc
aacgcacaatccagagcaatggaggaaggtttaagaaaactcaatgtcccttataaaatc
tatggcggactatctttttaccaacgtaaagagatcaaggatttaattgcttatttccgc
ttaaccttcaatccaagtgatgaagaagccatcaaaagggtgatcaattacccaaaaaga
gggcttggcgatacgacagtggaaaaactattggttgctgcagatgagcacaatgtgacc
atgtgggaagtagtatgtaatccacagcagtacattgccggcagaatcgccaatcaattg
aatgatttcgcaatgatgattaagagtttcactgtagaagccaagaaattggatgcttat
gaagccgctttatacatcgcgcaacattctgggattttaaaagaattacattccgacatg
actgatgaaggtcgtgggcgacatgaaaacatacaggaattattaaacgggatcaaggaa
ttcggagaacgcgaagatatcgaagaccgcagtctggaagtatttatgcaggacattgcc
ttgctgaccaatgacgataagtcgaacgacaagaacgtagataccgtttccttaatgacc
attcactcttcaaaaggtctggaatttaagaacgtatttgtagttggtttagaggaaaac
cttttcccttctcagatgtcgctcaattcaaggtctgatttagaagaagaacgcaggttg
ttttatgtagcggtaactcgtgcagaaaagaaactgacccttacctactctacttcgaga
tacagatggggaactttaaccaattgtgagccgagtcgttttatcgaagaaatcaatgcc
cgttacctggagattgaggtaccaaaatctgctaaaccacctattggtgatgacagtttc
tcttctgaaagaagaagctggacacagcaaagggatagcttcagcaagccaaagcctgca
gcttctagcacagcaacaggtacttctaccgctccaagacctaaaacatcggtattacct
aaagcccacgtgcctacaccaggtttcgcacctgatgcggccaaccttttccaaaatgga
atggaagtggagcatgagaaattcggtttcggtaaaattgtgagtctggaaggcagctta
cctgatgtaaaagcaacggtattttttcaaggcctgggtaataagcagttattattaaaa
tttgctaaattgcgaattgttaaataa
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