Pedobacter gandavensis: QG516_20720
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Entry
QG516_20720 CDS
T09013
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pgj
Pedobacter gandavensis
Brite
KEGG Orthology (KO) [BR:
pgj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pgj03016
]
QG516_20720
Enzymes [BR:
pgj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
QG516_20720
Transfer RNA biogenesis [BR:
pgj03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
QG516_20720
Prokaryotic type
tRNA splicing ligases
QG516_20720
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
AA_kinase
Motif
Other DBs
NCBI-ProteinID:
WGQ08939
LinkDB
All DBs
Position
complement(4920489..4921889)
Genome browser
AA seq
466 aa
AA seq
DB search
MGNLRTKDLSKIGYHNDQLRSLVITIASKNFKHHSKQQLLDLLVNIKNDPEAFLDNELTR
KIAEKVIGKVEGQTFKAFELQSEPVYCKTYGGKGIESSAKKQMELASLLPISVQAALMPD
AHMGFGLPIGGVLATDNAIIPYAVGMDIGCGMAISIIDESETFLKRFEYQIKQALKNHTH
FGMEGGLDIRQEHEVLNSHLFNEISFLKPLRSKAVKQLGTSGSGNHFVEFGEIALSENNT
LGLPAKKYTALLTHSGSRGLGSAIARHYTQIAMNTCKLPRQAQQLAWLDMNSETGQEYWL
TMNLAGDYAQACHERIHANLLNALGLKALLVVENHHNFAWEEQLADGKKVIIHRKGATPA
HEGELGIIPGSMTTPAYLVSGKGVSNALYSASHGAGRAMSRQKAKDNMTVSSMKKMLTNA
GVTLIGGTVEENPLAYKDIESVIAAQKELVDIQGKFFPRIVRMNKE
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atgggcaatttaagaacaaaagatttaagtaaaataggttatcataatgatcagctgcga
agcctggtcattactatagcctccaaaaatttcaaacaccacagcaaacaacaattactt
gatttgctggtaaatattaagaatgatccagaagcatttttggataatgaactgacaagg
aaaatagccgagaaggtcatcggtaaagtagaaggacaaacgtttaaagcatttgaatta
cagtccgagcctgtgtattgcaaaacttatggcggcaagggtattgagtcatcagcaaaa
aaacaaatggagctggctagcctgttgcctataagtgtgcaagctgcactaatgccagat
gcgcatatgggctttggcttgcctattggtggcgtgttggctacagataatgcaataatt
ccttatgcggtaggcatggatatcggctgcgggatggcaatatcaattattgatgagagc
gaaactttcctgaaacggtttgaatatcagatcaagcaagccttaaaaaaccatacgcat
tttggcatggaaggtggtttagatatcaggcaggaacatgaggtattaaatagccacttg
tttaatgagatttcatttttgaaacccctgcgcagtaaagcagtaaagcaattaggcacc
tcaggaagtggcaatcactttgtggaatttggtgagatagcgctttccgaaaataacacc
ttaggattaccagctaagaaatataccgcattattaacccactccggcagccgcgggcta
ggttcggccatagcaaggcactatacgcagatcgcgatgaatacttgcaagctgccaagg
caggctcaacaactggcttggttagatatgaacagtgaaaccggtcaggaatactggcta
accatgaatttagcaggcgactatgcccaggcttgtcatgaacgtattcacgccaacctg
ttaaatgcactgggattaaaggctttacttgtagtagaaaaccatcacaactttgcatgg
gaagagcagctggctgacggtaaaaaagtaatcatccatcgtaaaggtgcaacaccagcg
catgaaggcgagttgggtatcattccgggcagtatgaccactccagcttatcttgtatca
ggcaaaggtgtaagtaatgctttatactccgcatcgcacggtgccggtcgcgcaatgagc
agacaaaaggctaaggataatatgactgtttcatcgatgaagaaaatgctgactaatgca
ggtgttactttaattggtggaacagttgaagaaaaccctttagcttataaagatatcgaa
agcgtaattgctgctcaaaaggagttagttgatatccaaggcaagttttttccgcgtatt
gttagaatgaataaggagtag
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