Pedobacter gandavensis: QG516_22290
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Entry
QG516_22290 CDS
T09013
Symbol
priA
Name
(GenBank) primosomal protein N'
KO
K04066
primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pgj
Pedobacter gandavensis
Pathway
pgj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pgj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
QG516_22290 (priA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pgj03400
]
QG516_22290 (priA)
Enzymes [BR:
pgj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
QG516_22290 (priA)
DNA repair and recombination proteins [BR:
pgj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
QG516_22290 (priA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PriA_3primeBD
DEAD
ResIII
Helicase_C
PriA_C
Zn_ribbon_PriA
Cas3-like_C_2
nSTAND3
TrmB
Zn_ribbon_6
DUF5839
Tox-PLDMTX
AAA_30
AAA_33
HypA
DUF7129
Motif
Other DBs
NCBI-ProteinID:
WGQ09248
LinkDB
All DBs
Position
5285585..5288062
Genome browser
AA seq
825 aa
AA seq
DB search
MSAGQLEFEERETLFIEVILPLSLAKNYIYRVPFELNDQIAVGKRVVVQFGKSKIYTALI
KSVSQQAPEIYQAKYIIDVVDEHPVITALQLEFWEWMTSYYLCNEGEVMAAALPAGLKLA
SETIIVLKEEFPQDGEVLNLKQETLINALKVHGRLTIDQVSALLGQKTVYPIINTLLDKE
MVYIAEEVIEKYKPLLKSFVTLHPFYQDEENLKELFAVLERAPKQLNALLTYLKLSRQQS
TIPKAQLQEESDCGPAALKTLMDKEVFVIEKKPVSRLKEQDDDFVLNFELSENQQLALTQ
IETEFEKKDVVLLHGVTASGKTQVYIRLIEKAIENGGQVLFLLPEIALTTQIVERIQRYF
GDAIGVYHSKFNNNERVEIWNKVINGKYRIVLGARSAVFLPFQNLKLIVIDEEHESSYKQ
QEPAPRYQARDAAVYLAWLHKAKVVLGSATPSIESYFNALHQKYGLVTMSERFGGVALPI
QEVISISEETKKKKMISYFSSQLVEEIENTLKLKEQVILFQNRRGYATILICATCGYAPK
CVSCDVSLTYHKTSGKLHCHYCGYHQNSINVCPACGSVHIEQKGFGTERVEEELTLIFPE
AKIARLDVDSTRTKNGLQQIISDFQEKKTDILIGTQMVAKGLDFDNVTLIGVINADTLLN
YPDFRAFERSYQLLAQVAGRAGRRDKQGKVIIQAYDDKHRIITQVIDNKYQEMYTDEIRE
RREFQYPPFTRVIFVNIKHKDMNLLNVAAQKFANVLKGHLGSRVLGPEQPMVGRIRNYYI
KQIIIKTDKNTAITKVKSILKDVILQFQAEKEYRGAIVQVDVDPY
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
atgagtgctggtcaactggaattcgaagaacgggaaacgctgtttatcgaagtgatcttg
ccattgtcgttggcgaagaattatatctatagggtgccttttgaactgaatgatcagatt
gcggtaggaaagcgtgtggtggttcagttcgggaaaagtaaaatttatacggcgctgatt
aaaagcgtcagtcagcaggctccggaaatttatcaggccaaatacatcatcgatgtggtg
gatgaacatccggtaattacggctttacagctggaattctgggaatggatgactagctat
tacctttgtaatgagggagaagtgatggcggcagcattgcccgcaggtttgaagctggcc
agtgaaacgatcatcgtgctgaaagaagaatttcctcaggatggtgaagtgctcaatctt
aaacaagaaactctcatcaatgcgttaaaagtgcatggtcgattgacaatagatcaggta
tctgctttgttaggacagaaaaccgtgtatccgatcatcaatactttactggataaggag
atggtgtatattgccgaagaggtgatagaaaagtataaaccattgttaaaatcttttgtc
accctccatccattttaccaggatgaagagaatttgaaagaactcttcgctgttttagag
cgcgctccaaagcaattgaatgcactgctgacttatttaaagttgtccaggcaacaaagc
acgattccgaaggcacaacttcaggaagagagtgattgtggtccagccgcgctaaaaacg
ttgatggataaagaagtttttgtgatcgagaagaagccggtgagcagactcaaagagcag
gacgatgattttgtgctgaactttgaattgagcgaaaaccagcagctggctttgacacaa
attgaaacagaatttgaaaagaaagatgtggtgcttttacatggggtcacggcctcaggt
aaaacacaggtatacatcagactgattgaaaaagcaattgaaaacggcggacaggtttta
ttcctcctgccggagattgccctgactactcagattgtagagcggatccagcgttatttt
ggggatgcaattggggtatatcactctaaattcaacaacaatgaaagggtagaaatctgg
aataaggtgatcaatggtaagtaccggattgttttaggcgccagatctgcagtgttttta
cctttccagaacctaaaactgattgtcattgatgaggagcacgaatcttcctacaaacag
caggaaccggcaccacgttatcaggcaagggatgcagcagtgtatctggcctggttacat
aaggcaaaagtagtattgggttcggctacgccatctattgaaagctatttcaatgcgctg
caccaaaaatatggcctggtgacgatgtctgaacgatttggtggggtcgctctgcctatt
caggaggtgatcagcatttcagaagagacaaaaaagaaaaagatgatttcttatttctcc
agtcagctggtggaagaaatcgaaaatactttgaagctaaaagaacaggtaatcctgttt
caaaacagacgtggttatgctacgatcctaatctgtgcaacttgcggttatgccccaaaa
tgtgtgagctgtgatgtgagtttaacgtatcataaaaccagcggcaagttacattgccat
tattgcggttaccatcaaaatagcatcaatgtgtgtccggcttgcggttctgtacatatt
gagcaaaaaggttttggaactgaaagggtagaagaggaactgacgctgatcttcccggaa
gcgaaaatagcaaggttagatgtcgacagtaccagaacgaaaaatggattgcagcagatc
atttctgatttccaggaaaagaaaactgatatcctgatcggtacacaaatggtggcgaaa
ggactggatttcgacaatgtgacactcatcggggtgatcaatgccgatactttattgaac
tatccggatttcagagctttcgaaagaagctatcaattgctggcacaagtagcgggtaga
gctggaagaagggacaaacaaggaaaggtgatcattcaggcttatgatgataaacaccgg
atcattactcaggtaattgataataaatatcaggaaatgtatacggatgagattcgtgag
cgaagagaattccaatatccgccttttaccagggtgatttttgtcaatattaaacataaa
gacatgaacctgctgaatgttgccgcacagaaattcgctaatgttttgaaaggacatctg
gggagccgggtacttggaccagagcagccaatggtaggtagaatcaggaattattacatc
aagcaaatcattattaagacagataaaaatacagccatcactaaagtgaaatcgatatta
aaggacgttatattgcaatttcaggcagaaaaggagtaccgcggggcaattgttcaggtg
gatgtagatccttactag
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