Pedobacter gandavensis: QG516_24265
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Entry
QG516_24265 CDS
T09013
Name
(GenBank) hypothetical protein
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
pgj
Pedobacter gandavensis
Pathway
pgj00040
Pentose and glucuronate interconversions
pgj01100
Metabolic pathways
pgj02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
pgj00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
QG516_24265
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
QG516_24265
Enzymes [BR:
pgj01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
QG516_24265
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
HVO_1552_C
Motif
Other DBs
NCBI-ProteinID:
WGQ09632
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Position
complement(5743463..5744431)
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AA seq
322 aa
AA seq
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MYTLLLSLLVLSYTANFGGTGLKKSAFMGLAQQQIIGFAGMEGGTTGGGKGLEIEVKTLA
ALKAAAAAEQPLIIHFSGQLKGTGFIRVKSNKTMIGSSGSYLEGIGLLIYGDHNVIIRNM
TIRKVVQYSNIVIKEGAHHVWIDHCSLSSDRDHGWSHYDGLLDVGNQADYVTLSWNKLHD
NHKAMLIGFGDENTDDFGRLRVTVYKNYFYNISERQPGVRFGQVHVFNNYLKDGSGYGIG
STMEATVRTDHNYFENIVHPIRTNFNSKPGFLVAASGNFYKNCGKNIITTGVCIWNAPYS
YRQELLPVSEVPQTVLRGAGAK
NT seq
969 nt
NT seq
+upstream
nt +downstream
nt
atgtacaccttattactctccttactggtcctctcctacactgctaattttggaggtaca
ggattgaaaaaaagcgcctttatgggtttggcccagcagcagatcattggttttgccgga
atggaaggcggcactaccgggggcggaaaaggcctggaaattgaagtcaaaacgctggca
gccttaaaagcagcagcggcagcggaacaaccactgatcattcacttttcagggcagctc
aaaggaacaggttttatccgcgtcaaatccaacaaaacgatgattggcagcagcggttcc
tatttagaaggcatcggtttgctcatttatggagatcacaatgtgatcattagaaatatg
acgatacgcaaagttgtacaatactccaacattgtaattaaagaaggtgctcaccatgtt
tggatagaccattgcagtttatcatctgatcgggaccatggctggtcgcattacgacgga
ttgctggatgtgggtaaccaggccgattatgtgaccttatcctggaacaaactacacgat
aaccacaaagcaatgctgattggttttggggatgaaaacactgatgattttggacgttta
agagtgaccgtctataaaaattacttctacaacatttcagaacggcagccgggggtaaga
tttggacaagtgcatgttttcaataattacctgaaagatggcagcggttatggcattggc
tccaccatggaagccacggtaagaacagaccataattactttgaaaacatcgttcatcct
atcaggacaaatttcaacagcaagcctggctttttggtggctgcttccggaaatttctat
aaaaactgcggcaaaaacatcatcactaccggagtttgtatctggaatgccccttattct
tatcggcaggaattgctgcccgtttcggaagtcccgcagactgtacttcgtggtgcaggg
gctaaataa
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