Peptoniphilus genitalis: M9426_07100
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Entry
M9426_07100 CDS
T10321
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pgk Peptoniphilus genitalis
Pathway
pgk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pgk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
M9426_07100 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pgk03400
]
M9426_07100 (mfd)
Enzymes [BR:
pgk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
M9426_07100 (mfd)
DNA repair and recombination proteins [BR:
pgk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
M9426_07100 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
KARI_C
Motif
Other DBs
NCBI-ProteinID:
URN41018
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All DBs
Position
1479749..1483228
Genome browser
AA seq
1159 aa
AA seq
DB search
MNFLINSVKNLEAFKELDNSIKISKNTAVFGSEEAVLSLFAPTFAADGRKVCLISQDRVR
ARKAYEDIESISDETCVYYPEKDVFFYDRDSKSKENTKKRLEAMAEISSGRAKMVVTTLN
ALTAKISRPEIFASYKIPIEVGQVLNLDVLPKKLVEMGYERFPSVEGLGQFSLRGSIIDI
GTQDANYRIELFDDEVDSIRSFEIESQRSIDKLEKITIYPIEDLIIKADERDQVAERIKK
DLSKTKLQGKEKDRLNEKFLRYVDRLENQETIINKDLILPYVDQEEVGSFLDYLDDFIFL
IEEPSRILEREEELDLANGEKFAILIENGEVTKSHEKTFYNYKDIVDKLNEKTLITFNAL
LKPPKMFKPKDIVNIKVKSVTNYMSKIKLFKEDLDYYGKNNFQVILLGATEKRAKRLFDH
LVDLGYSPHLAKNTKNEKITSKLVVTTGALNEGIEFSDSKTVFINYSEIYGSFSKNKKKK
PAKKKALNFEDLQIGDYVVHEAHGVGKYVGTRRLEVSGIQKDYILIEYGGEDKLFLPIEA
LDSIYKYVQEGKRPPKVNKLNSLDWKKKKARARQSIDDMAEDLIKLYATRENTKGFAFSE
DSQYQREFEDAFIYEETPGQLKSAEEIKEDMEKASPMDRLLCADVGYGKTEVALRAAFKA
ILDGKQVAILVPTTILAQQHYNTIKERFKNFPVGVGLLSRFRSKKDQKMDLEGLKDGNID
IIVGTHRLLSKDVKFKDLGLLIIDEEQRFGVRHKEKLRMLKENVDTLTLTATPIPRTLQM
SMIGIRDMSVIEEPPEERFPVETYVLEYNNLMVREAILKEIERGGQVYFLYNKVSNMENK
LLELRKLVPEATFSMANGQMTEKALEDTMIDFIEGNVDVLVCSTIIETGMDVPNANTMII
TDSNRLGLSQLYQLRGRIGRSSRIAYAYFTYDRSTSISEVAQKRLQAIKEFTEFGSGHKI
AERDLEIRGSGSILGSRQSGHIEKIGYDLYMKYLKDAVMKLKGLDVEEEIETTIDLKLDS
FIPKEYIADDRTRLEIYKKISVLSTEEEYSDLVDELIDRFSDFPDEVSNLMDIALLKNKA
QKAKVSSIVERRGEYRVRVEGEVELPAIMEINNEFENVSYSMGNVNEIVLTKLKYPLDKL
KKLVTILYLHKKDTKTSKK
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
ttgaattttttaatcaatagtgtaaagaacctagaagcttttaaggaattagataattca
ataaaaatttcaaagaacactgcagtctttggttcagaggaggcagtgctctctcttttt
gcgcccacttttgcagctgatgggaggaaagtctgccttatctcacaagatagggtaagg
gcaagaaaggcctacgaggacattgagtccatatcagatgagacctgcgtctattatcca
gaaaaggacgtctttttctacgacagggattcaaagtccaaggagaatacaaagaagagg
ctagaagccatggcagagatttcaagtggcagggcaaagatggttgtcacaaccttaaac
gccttgactgcaaagatatcaaggccagaaatttttgcatcttataagattcctatagaa
gttgggcaagttttgaatcttgacgtcctacccaagaaacttgtggaaatgggttacgaa
agatttccaagtgttgagggtctaggtcaattttctcttaggggttccatcattgacatt
gggacccaagatgccaactacaggatagaactttttgatgacgaagttgattccattagg
tcctttgaaattgaaagccaaaggtccattgataagctagaaaaaattacaatctatccc
atagaagacttgattataaaagcagacgaaagagatcaagttgctgagagaattaaaaaa
gacctttccaagaccaagctccaggggaaagaaaaagatagactcaatgaaaagtttttg
agatacgttgacaggttagaaaaccaagagactattatcaacaaggacctaatccttcct
tatgtagaccaagaagaagtgggatccttcttagattacttggatgattttatattttta
attgaagagccttccaggattcttgaaagagaagaagaacttgatcttgcaaatggagaa
aagtttgcaatcttaatagagaatggtgaagtcacaaagtctcacgaaaaaactttttac
aactataaggacatagtcgacaagttaaatgaaaaaactttaataacttttaacgcccta
ttgaagccaccaaagatgtttaagccaaaggacattgtgaacatcaaggtcaagagcgtg
acaaactacatgtcaaagataaaacttttcaaggaagacctagactattatggaaaaaat
aatttccaagtcatcctccttggggcaacagaaaaaagagccaagcgtctttttgatcac
cttgtggacttgggctactcaccacacttggcaaaaaatacaaagaatgaaaaaatcact
tccaagcttgttgtcactactggtgccttaaatgaaggaatagaattttcagattcaaag
acagtttttattaattattcagaaatttatgggtccttctcaaagaataaaaagaaaaaa
ccagctaagaagaaggcactaaactttgaagatttacaaattggtgactacgtagttcac
gaggcccatggtgttggtaaatatgttgggacaagaagacttgaagtctcaggcatacaa
aaggactacattcttattgagtacggtggagaggacaaactcttccttccaatagaagct
cttgattccatttacaagtacgtacaagagggcaagaggccgccaaaggtcaacaagtta
aactctcttgactggaaaaagaaaaaggctcgtgcaagacagtccattgacgacatggct
gaggacttaataaaactctacgcaactcgtgagaataccaaaggctttgcctttagtgag
gactcccaatatcaaagggagtttgaggatgccttcatctatgaagaaactcctggccag
ttgaagtctgctgaagagataaaagaagacatggagaaggcatctccaatggatagactt
ctctgcgccgacgttggttatggaaagacagaggttgcccttcgtgcagcctttaaagca
atacttgacggaaagcaagttgcaattcttgtgccaacaactatattagctcagcaacac
tacaacacaattaaggagaggtttaaaaacttccctgtgggagttggacttctatcaagg
tttaggtccaagaaggatcagaagatggaccttgaaggtctgaaggatggcaacattgat
ataatagtgggaactcacaggctcctttccaaggacgtgaagttcaaggacttgggactt
ttaattattgacgaagagcaaagatttggagttcgtcacaaggaaaagttgaggatgcta
aaggaaaatgtagacaccttaactctaacagccacaccaattccaaggactcttcagatg
tctatgattggaataagggacatgtctgttattgaagagccacctgaagagagatttcca
gtggaaacttacgtcctagagtataacaacctcatggttcgtgaggccatcctaaaggaa
attgaaaggggaggacaagtttacttcctctacaacaaggtttcaaatatggaaaataaa
cttttggaacttaggaagcttgtgccagaggcgaccttctctatggcaaatggtcagatg
actgagaaggcccttgaagatacaatgattgacttcatagagggtaatgttgacgtatta
gtttgctcaactataatagaaacgggtatggacgttcccaatgcaaacacaatgataata
acagactccaataggttgggactttcacaactttatcaacttcgtggaaggataggcagg
tcatcgagaattgcctacgcctacttcacctacgacaggtccacatcaatctctgaagtg
gcacaaaagagactccaagctataaaagagttcactgagtttgggtcaggtcacaagatt
gcagaaagagacctcgagataagagggtctggatccatactagggtcaagacagtcaggt
cacatagaaaaaattggttacgacctctacatgaagtatctaaaggatgctgtcatgaag
ttaaagggtcttgatgttgaagaagaaattgaaactacaattgatctcaagctggattcc
tttataccaaaagaatatattgctgatgacaggacaaggcttgagatttataaaaagatt
tctgttttatcaactgaagaagagtactcagaccttgttgatgaattaatcgacaggttc
tcagacttccctgatgaagtttcaaacctaatggacattgccctcttaaagaacaaggcc
caaaaggcaaaagtttcatctattgttgagagaagaggagaatatagggtaagagtagaa
ggtgaggttgagcttcctgccataatggaaataaacaacgagttcgaaaatgtttcctac
tctatgggcaatgttaatgaaattgtattgactaagctcaagtatcctctcgataagctt
aaaaaactagttacaattttgtatttacacaaaaaggacacaaaaacttctaaaaagtag
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