Phaeobacter inhibens 2.10: PGA2_c08370
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Entry
PGA2_c08370 CDS
T02193
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
pgl
Phaeobacter inhibens 2.10
Pathway
pgl03410
Base excision repair
pgl03430
Mismatch repair
pgl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pgl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PGA2_c08370 (recJ)
03430 Mismatch repair
PGA2_c08370 (recJ)
03440 Homologous recombination
PGA2_c08370 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pgl03400
]
PGA2_c08370 (recJ)
DNA repair and recombination proteins [BR:
pgl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
PGA2_c08370 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
PGA2_c08370 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PGA2_c08370 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Prok-RING_1
Motif
Other DBs
NCBI-ProteinID:
AFO86850
LinkDB
All DBs
Position
complement(928271..930013)
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AA seq
580 aa
AA seq
DB search
MSFLGVETSLSGRRWIGPDVEVARAAEMMEQQTALPAAVCQVLARRGVPSHEASGFLTPQ
LKELLPDPRRMKDMEPAAARFLQAVERRERIAVFADYDVDGGSSAALLLVWLNQVGLSAT
LYVPDRIDEGYGPNDAAMAALAREHDLIVCVDCGTLSHGPIAAAKGADVIVLDHHLGGET
LPDCVAVVNPNRQDEDGDLGYFCAAGVVFLMLVELRRQMRDKGLGTGPDLMALLDLVALA
TVADVAPLIEANRALVRQGLKVMATRQRPGLVALADVSRMDSAPSTYHLGFLLGPRVNAG
GRIGKADLGARLLATSDPAEAEAIAARLDELNTERRDIENAVRAAALEQAEARGLDAPLV
WAAGEGWHPGVVGIVASRLKEAAGRPAIVIGLDGDEGKGSGRSVSGIDLGASIQRAAAEG
LLIKGGGHKMAAGLTVAREQLEPAMARLSELLAKQGAGDLGPSDLKLDGMLMPGAATVPL
IEQIEQAGPFGAGAPAPRYGFPDLQVRFAKRVGESHLKLSLSDGLSSGIDAICFGAFDTA
LGSRLLDHGGARFHFAGRLEINTWGGRQSVQLRLEDAAEA
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atgagctttctgggagttgagacttcactcagcgggcgtcgctggattggccccgatgtg
gaggttgcccgcgcagccgagatgatggaacagcagaccgccctgcccgccgccgtctgt
caggtgctggcccggcgcggcgtcccgtcccatgaggccagcggttttctgacgccgcag
ctgaaggaattactccccgatccacgccggatgaaagatatggaacccgctgcggcccgg
ttcctgcaagcggtggagcggcgcgagcggatcgcggtctttgccgactatgacgttgat
ggcggctcctcagcagcgctgctgttggtctggctcaaccaggtagggctgagcgccacg
ctctatgtccccgaccgtatcgacgagggctacggccccaatgacgccgcgatggccgcg
ctggcccgtgagcacgatctgattgtctgcgtcgattgcggcacgctgtcacatggtccg
attgccgccgccaaaggtgctgatgtgattgtgctcgatcaccatctgggtggagagacc
ctaccggactgtgtcgcagtggtgaatcccaaccgccaggatgaggatggcgacctgggc
tatttctgtgctgcaggcgtggtgtttctaatgttggtcgagctgcgccgccagatgcgg
gacaaggggcttggcaccggtcctgacctgatggccctgctggatctggtggcactggcc
accgttgcggatgtggcacccctaattgaagccaaccgcgcgctggtgcgtcaggggctg
aaggtcatggccactcgtcagcggcccggactggtggcactggcggatgtctcgcggatg
gattctgccccctccacctatcatcttggctttctgctggggccacgggtcaatgctggc
gggcgcatcggcaaggccgatcttggtgcgcgattgctggcgaccagcgacccggccgag
gccgaagccatcgccgcccggctggatgagctgaacaccgagcgccgcgatattgaaaac
gccgttcgcgccgccgcgctggagcaggcggaggcgcgcgggttggatgcgccgctggtc
tgggccgctggtgaaggctggcaccccggcgttgttggcatcgttgcctctcgcctgaaa
gaggccgcaggtcgtcccgccatcgtgattggcctggatggcgatgagggtaagggatcg
ggccgctcggtcagcggcattgacctgggcgcctccatccagcgcgctgcggctgagggg
ctcctgatcaagggcggcggacacaaaatggcagctgggctgacggtcgcgcgcgagcag
ctggaacctgccatggcgcggctgagcgagctgctggccaaacagggcgccggtgatctg
ggcccaagtgacctgaaactggacggcatgttgatgcccggtgccgcaacggtaccgttg
atcgagcagatcgaacaggcaggcccctttggggccggcgcccccgccccccgctatggg
tttcccgacctgcaggtgcgttttgccaaacgagttggcgaaagccacctgaaactctcg
ctcagtgacgggttgagcagcgggattgacgccatctgctttggcgcctttgatactgct
ttgggatcgcgcctgctggatcacggcggcgcccgtttccactttgccggtcgccttgaa
atcaatacctgggggggccgccaatccgtacagctgcggctggaggatgccgccgaggcc
tga
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