Phaeobacter inhibens 2.10: PGA2_c13230
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Entry
PGA2_c13230 CDS
T02193
Name
(GenBank) putative ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
pgl
Phaeobacter inhibens 2.10
Brite
KEGG Orthology (KO) [BR:
pgl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pgl03016
]
PGA2_c13230
Enzymes [BR:
pgl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
PGA2_c13230
Transfer RNA biogenesis [BR:
pgl03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
PGA2_c13230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
AFO87328
LinkDB
All DBs
Position
1453735..1454892
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AA seq
385 aa
AA seq
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MKTLTSTEDLQAFCEAAAQHDYVTVDTEFLRERTYYSKLCLVQLAYPGAGDENAVLVDPL
ADGLSLEPLYDLFRNETVVKVFHAARQDLEIFWVDAQVFPKPLFDTQVAAMVCGFGEQVG
YETLVRKIVKQGLDKTSRFTDWSRRPLSDAQKTYALADVTHLRQIYEYLAAELKRTGRAR
WVEEELQVLTDPATYDVDPQEAWRRVKTRTNSGKFLAVVRELAAFRETYAKTNNVPRNRV
FKDDALVELASTKPKNASDLGNSRLLLREARKGVIAEGILQAVAKGADCPAGSQPQPDRS
REKLQVNPALADLLRVLLKAKTEASGVAAKLIAPSSDLDAIAAGQRNVPALKGWRLEVFG
ADALRLCNGEIALAAKGQDVKVVTL
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
atgaaaactctgacctctaccgaagacctgcaggccttttgcgaagctgcggcgcagcat
gattatgtcacggtggataccgagtttctgcgagaacggacatattactccaagctatgc
ctggtgcagcttgcctatcccggggccggggatgagaacgcggttctggtggaccctctt
gccgacgggctgtcgctggaaccgctatatgatctgtttcgcaatgagaccgtggttaag
gtctttcatgccgcccgtcaggatctggagattttctgggttgatgcacaggtcttcccg
aaaccgctgtttgacacgcaggttgcggccatggtctgcggctttggtgaacaggtcggc
tacgagactttggtgcgcaagatcgtcaaacaggggttggacaagacgtcacgcttcacc
gattggtcccgtcgcccgctgagcgacgcacagaaaacctatgcgctggcggacgtgacc
catctgcgccagatctatgaatatcttgccgctgagctgaagcgcaccggtcgcgcccgt
tgggtcgaggaagagttgcaggtgctgacggatccggcgacctatgatgtcgaccctcag
gaggcctggcggcgggtgaaaacccgcaccaactctggcaagtttctggccgttgtgcgc
gaattggcggcgttccgcgaaacctacgccaagaccaacaatgtgccacgcaaccgggtg
ttcaaggatgatgcgctggttgaactggcctcgaccaagcccaagaacgcctcggatctc
gggaattcgcggctgctgctacgcgaagcccgcaagggggtcatcgccgaagggatcctt
caggctgtggccaagggcgcggattgcccggcaggatcgcagccgcagccggatcgtagc
cgtgaaaagctgcaggtgaacccggcgctggccgatttgctgcgggtgctgttgaaggcc
aagacggaagcctccggcgtcgccgcgaagctgattgcgcccagttcggatctggacgcg
attgctgcgggtcagcggaatgtccccgcgctcaaaggctggcgtcttgaggtcttcggc
gccgatgcgctacgtctgtgcaatggtgagatcgctctggcggcaaagggacaggacgtg
aaggttgtcacgctctga
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