Phaeobacter inhibens 2.10: PGA2_c31250
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Entry
PGA2_c31250 CDS
T02193
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase Pnp
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pgl
Phaeobacter inhibens 2.10
Pathway
pgl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PGA2_c31250 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgl03019
]
PGA2_c31250 (pnp)
03016 Transfer RNA biogenesis [BR:
pgl03016
]
PGA2_c31250 (pnp)
Enzymes [BR:
pgl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
PGA2_c31250 (pnp)
Messenger RNA biogenesis [BR:
pgl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PGA2_c31250 (pnp)
Transfer RNA biogenesis [BR:
pgl03016
]
Prokaryotic type
tRNA degradation factors
PGA2_c31250 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
PNPase
KH_1
S1_RRP5
KH-I_KHDC4-BBP
BioW
BBS2_CtH
Motif
Other DBs
NCBI-ProteinID:
AFO89088
LinkDB
All DBs
Position
3397548..3399686
Genome browser
AA seq
712 aa
AA seq
DB search
MFNVTKKSMQWGEETLTLETGKVARQADGTVIATLGETSVMANVTFARQQKPGQDFFPLT
VHYQEKYYAAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSH
DLVNDPDMVAMIAASAALTLSGAPFMGPIAAARVGFEGGEYVLNPTVDDMQDLRLNPDQR
LDLVVAGTKDAVMMVESEAYELTEAEMLGAVKFAHEQIQPVIDLIISLAEEAAKEPFDFQ
PADYSELFAAVKAAGEEQMRAAFAITDKQERTAAVAAAREAIKTSLSEEQLEDANLGSAL
KKLEAGILRGDVVKTGKRIDGRSTTDVRAIESETGMLPRTHGSALFTRGETQALAVTTLG
TGDDEQFIDALHGNFKSNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAVLPA
PTDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEDDGSYA
ILSDILGDEDHLGDMDFKVAGTDKGITSLQMDIKVAGITPEIMEKALDQAKDGRLHILGE
MAKALSETNAFSVHAPRIETMQIPTDKIREVIGSGGKVIREIVETSGAKVDINDDGVIKI
ASADGTAIQKAYDMIHSIVAEPEEGAVYTGKVVKIVDFGAFVNFFGKRDGLVHVSQIENR
RLNHPSDVLKEGQEVKVKLLGFDDRGKVRLSMKIVDQETGEEIKAEKKEDAE
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atgtttaacgttacaaagaaatcgatgcagtggggcgaagagacgctcacactggagacc
ggcaaggtcgcccgtcaggcagatggcaccgtgattgccaccctgggcgagacctcggtt
atggcaaacgtcacttttgcccgccagcaaaaaccgggtcaggacttcttccccctgacc
gtgcactatcaggaaaaatactacgctgcgggcaaggtccccggtggttttttcaagcgt
gaagcacgcccaaccgaaaaagaaacactgactgcgcgcctgatcgaccgtccgatccgc
ccgctgttcgttcccggtttcaagaacgaagttctggtgatgtgcaccgtgctgagccac
gatctggtcaacgatcccgacatggttgccatgatcgcagcctccgcggcgctgaccctg
tccggcgcgcccttcatgggtccgatcgctgctgcacgcgttgggtttgagggcggcgag
tacgttctgaacccgactgttgatgacatgcaggacctgcgcctgaaccctgatcagcgt
ctggatctggttgtcgccggtaccaaagatgccgtgatgatggttgaatccgaagcctat
gagctgaccgaagcagaaatgctgggtgcggtgaaattcgcacacgagcagatccagccg
gtgatcgacctgatcatctctttggcggaagaagcggcgaaagagccgtttgatttccag
cccgccgactattccgagctgttcgccgccgtgaaagccgctggtgaagagcagatgcgt
gccgcattcgcgatcaccgacaagcaggagcgcaccgccgctgttgccgctgcccgcgaa
gcgatcaaaacctcgctgagtgaagaacagctggaagatgccaacctcggctccgccctg
aagaagctggaagctggcattctgcgtggcgacgtcgtcaagaccggcaagcggatcgac
gggcgttcgaccactgacgtccgcgctatcgagtcggaaaccggcatgctgccgcggacc
cacggttcggcgctgttcacccgtggcgaaacccaggcgttggccgtgaccacgctgggc
accggtgacgacgaacagtttatcgacgcgctgcacggcaatttcaaatccaatttcctg
ctgcactacaacttccctccctactcggttggtgaagtgggtcgcgtcggctccccgggc
cgtcgtgaaatcggtcatggtaagctggcatggcgcgccctgcaggcggttctgcctgcg
ccgaccgactttccctacaccattcgcgtggtgtctgagatcaccgaatccaatggctct
tcgtcgatggcatcggtctgcggtggttcactgtccatgatggacgcaggcgtcccgctg
aaggcaccggttgccggtgttgcgatgggtctgatcctggaagatgacggctcttacgcg
atcctgtcggacattttgggcgacgaagaccacctcggcgacatggacttcaaagtggcg
ggtaccgacaagggtatcacctcgctgcagatggacatcaaggttgcaggcatcacgcct
gagatcatggaaaaagcactggatcaggccaaagatgggcgtctgcacatcctcggcgaa
atggccaaggctctgtcggaaaccaatgcgttctccgttcatgcgccccgcattgagacc
atgcagatcccgaccgacaagatccgtgaagtgatcggctccggtggtaaggtcatccgc
gagatcgtggaaacctccggcgcgaaagtcgacatcaacgatgacggcgtgatcaagatc
gcatcggccgacggcaccgcgatccagaaggcctatgacatgatccactcgatcgtggca
gagccggaagaaggtgccgtttacaccggtaaggtcgttaagatcgtcgacttcggcgcc
ttcgtgaacttcttcggcaagcgcgacggtctggtgcatgtgtcccagatcgaaaaccgc
cgcctgaaccacccttcggacgttctgaaggaaggccaggaagtgaaagtgaagctgctg
ggctttgatgatcgcggcaaggtccgcctgtccatgaaaatcgtggatcaggaaaccggt
gaagaaatcaaagccgagaagaaagaagacgcagaataa
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