Paenibacillus glucanolyticus: A3958_04305
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Entry
A3958_04305 CDS
T09937
Name
(GenBank) DNA polymerase domain-containing protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pglu
Paenibacillus glucanolyticus
Pathway
pglu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pglu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
A3958_04305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pglu03400
]
A3958_04305
Enzymes [BR:
pglu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
A3958_04305
DNA repair and recombination proteins [BR:
pglu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
A3958_04305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
ANA79262
LinkDB
All DBs
Position
943980..944897
Genome browser
AA seq
305 aa
AA seq
DB search
MARTVKGTLNIEGQEIQITNPDKPLWPEVGITKAMYLQKLAAISPFLLRYCQGRLLTTIR
YPHGVQGESFYQKNAPEPLPPFVHTYVHENINYVLLNGLPELLWLGNLAALEFHPSLHLA
GSDQPCEWMIDLDPTLPEEPRIMEATAIVGNVLNSLGLNSVPKTSGATGVQIIVPIPAGV
TFDELRAVGQFVGQYVTEKFPKLFTIERLKKNRGDKIYFDYLQHYSGRTLAAPYTPRARK
LATVSTPLTWEEVHRDVSPTEFHLLNIVERLQEKGDLLQALPPQPIENVIRHLTSQGKNA
SKRKG
NT seq
918 nt
NT seq
+upstream
nt +downstream
nt
atggcccgtaccgtcaaaggaaccttgaacattgaaggtcaggagattcaaattaccaat
ccggacaaaccgctgtggccggaggtcggcattaccaaggccatgtatttgcaaaaactc
gcagcgatatcgcctttcctgcttcgatattgccagggaaggctgctgactaccatccga
tacccgcatggggtgcaaggcgaatcgttctatcagaaaaatgcgccggagccgctgcct
ccttttgtgcacacctatgtgcatgagaacattaattatgtgctgctgaatggattgccc
gagctgctctggctcgggaatctggctgcacttgagtttcatccgtcgctgcatttggca
ggcagcgatcagccctgcgaatggatgattgatctggatccgaccctgccagaggaaccc
cggatcatggaggcaactgcaatcgttggcaatgtgctgaactccttggggctgaactct
gtgccaaaaacctccggcgcaaccggggttcagatcatcgtcccgattccggcaggcgta
acttttgatgagcttcgcgcagtcggtcaattcgtaggccaatatgtgacggagaaattc
cctaagctgttcaccatcgagcggcttaagaaaaatcgcggggataaaatctatttcgat
tatctacagcactatagcggaagaacccttgctgctccttatacacctcgggcgcgcaag
cttgcgaccgtctctaccccgctgacctgggaagaggtccatcgggatgtttcgcctaca
gaattccacctgctgaacattgtagagcgtctgcaagaaaagggggatctgctgcaagca
ttgcctccgcaaccgatcgaaaatgtcatccgtcacctgacatcccaaggaaagaacgcg
tcaaaaaggaaaggctag
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