Paenibacillus glucanolyticus: A3958_25485
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Entry
A3958_25485 CDS
T09937
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
pglu
Paenibacillus glucanolyticus
Pathway
pglu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pglu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A3958_25485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pglu03019
]
A3958_25485
Messenger RNA biogenesis [BR:
pglu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
A3958_25485
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
AP_endonuc_2
Lactamase_B_6
PEP_mutase
Motif
Other DBs
NCBI-ProteinID:
ANA83117
UniProt:
A0A163E9E9
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Position
complement(5702512..5704191)
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AA seq
559 aa
AA seq
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MSKKISSDKLSIFALGGVGEIGKNMYVIQYANDIVVVDAGLKFPEEDMLGIDIVIPDISY
LTENRDKVRGILLTHGHEDHIGGLPYVLKHLNVPVYGTKLTLGLVENKLREANLLGETKR
ILINADSEVQLGNTLKATFFKTNHSIPDSVGISIETPEGNVVHTGDFKFDHTPVNDQYAD
LQRMAEIGSKGVLALLSDSTNAERPGFTPSEKNVGIVLEDIFRKAEQRVVVATFASNVHR
IQQVVNAAESTGRKITVIGRSMVNVVSIAAELGYLHIPEGMLIEPEEVNKMAADRVVVLC
TGSQGEPMSALTRMARSTHRKVDILPGDTVIIAATPVPGNEKYVGRTIDELFRLGADVIY
SGSNSGVHVSGHGSQEELKLMLNLMKPQYFIPVHGEYRMQRRHALLAESVGVDPDNIFIT
DIGEIVEIQGGSARKAGKVTAGNVLIDGLGVGDVGNIVLRDRKLLSQDGILVVVVTLSKQ
NGSIVSGPDIISRGFVYVRESEGLLDEANRIVSSTLQKLMSENVNEWASLKTSVKDALGR
FLYEQTRRRPMILPIIMEV
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
ttgtctaagaaaataagcagcgataaactatcgatttttgccttgggcggcgtcggtgag
atcgggaaaaacatgtatgtcatccagtatgccaatgacatcgttgtcgtggatgcggga
ttgaagttcccagaagaagatatgcttgggattgatattgttattcctgatattagctat
ttaacggaaaatcgcgacaaagtgagagggattttgctgactcacggtcacgaggaccat
atcggcggcctcccttacgtattgaaacacttgaatgttccagtatatggaacgaaattg
acgctcggattggttgagaacaagctcagagaagcgaatttgcttggtgagacgaaacgg
attctgatcaacgcagattctgaagttcaactcggaaacacgttgaaagcaaccttcttc
aagacgaatcacagcattccggattccgtgggaatctccattgaaacacctgaaggcaat
gtcgtgcatacgggggactttaagtttgaccatactccggtaaatgaccaatatgcagat
ctgcagcgtatggctgagatcggaagcaagggagttttggctctgctgtcggacagtacg
aacgcagaaagaccaggcttcacgccttctgagaaaaatgtgggcatcgttctggaagat
atcttccgtaaagcggagcagcgcgtagttgttgcaacgtttgcatccaatgtgcatcgt
attcagcaggtggtcaacgcagctgaatccacaggccgtaaaataaccgtaatcggcaga
agtatggtgaatgtggtatccattgcagcagagcttggatatctgcacattcccgagggt
atgctgattgagcctgaagaggtaaacaaaatggcagcggaccgtgtagttgttctgtgt
acaggcagtcagggtgaaccgatgtcagcgctgacacgtatggcccggtctactcatcgt
aaggtggacatcctgccgggagatacggtcatcatcgcagcaactccggtaccagggaat
gaaaaatatgtaggacgtacgattgacgagttgttccgtcttggagcagacgttatctat
agcggatccaattccggtgtccacgtttcgggacacggcagtcaggaagagctcaagctt
atgctgaatctgatgaaaccgcaatatttcatccctgtccatggcgagtatcggatgcag
cgccgtcatgctctgcttgcagagtccgtcggtgtcgatccggacaacatttttattacc
gatatcggtgaaattgttgaaattcaaggtggctcggcccgcaaggccggcaaagtgaca
gcaggcaacgttctgattgatggacttggtgtcggtgacgtgggtaacatcgtactgcgt
gatcgcaagctgctgtctcaggacggtatcttggtcgtcgttgttaccttgagcaagcaa
aacggttccatcgtatccggtcctgatattatttcgcgtggattcgtatacgttcgggag
tccgaagggcttctggatgaagccaaccgtatcgtttccagcacccttcagaagctgatg
agtgaaaacgtgaatgaatgggcgtcacttaagaccagcgtaaaagacgctttgggacgc
ttcttgtatgagcaaacacgtcgcagaccgatgatcttgccgatcattatggaagtctga
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