Paenibacillus graminis: PGRAT_07370
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Entry
PGRAT_07370 CDS
T03325
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pgm
Paenibacillus graminis
Pathway
pgm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PGRAT_07370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgm03019
]
PGRAT_07370
03400 DNA repair and recombination proteins [BR:
pgm03400
]
PGRAT_07370
Enzymes [BR:
pgm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PGRAT_07370
Messenger RNA biogenesis [BR:
pgm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PGRAT_07370
DNA repair and recombination proteins [BR:
pgm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PGRAT_07370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
Helicase_C
DEAD
HRDC
RecQ_Zn_bind
Helicase_Sgs1
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AIQ67473
UniProt:
A0A089M7L7
LinkDB
All DBs
Position
1627985..1629820
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AA seq
611 aa
AA seq
DB search
MKMQAPTMEQAQAELQKYYGYPDFREGQKKIVMNLLEGRDTLGIMPTGGGKSICYQVPAL
LLPGLTLVISPLISLMKDQVDALTTAGIPAAYINSTLSGKEVNERIRAARRGELKLLYVA
PERLELDWFRLEMAGLSISCVAVDEAHCVSQWGHDFRTSYLAVSPFVNELPERPILAAFT
ATATPEVMEDMVRLLRLRQPGVFMTGLGRDNLAMSVLRGENKREFVLDYTAQHSHQPGIV
YAATRKEVDDLYQRLQASGIAAGRYHAGMSDQERAESQEGFLYDDIRVMVATNAFGMGID
KSNVRYVIHYNMPKNMEAYVQEAGRAGRDGEPSQCILLFSAQDIMTQKFLIEQNPQDTDR
KANEYRKLQQMIDYCYTTRCLRSAQLDYFGEEHGDKPCGICSSCTDERELVDMTVDAQKI
FSCIHRMRERYGVALVSSVLKGSRNQKVLQYGFENLPTHGAMSSRTEKEITESINVLISE
GYLALSEGQYPVVRLQPLAAEVLRGQRQVLQRVARVRSTGGSSGGRDRSRVRDLSPSAVN
ETVFEQLRLIRRELAGREHVPSYIIFNDATLREMSVVCPQTEAEMLRVKGVGEVKYRKYG
KPFLEFFQNEM
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgaagatgcaagcacctaccatggaacaggcgcaggctgaactgcaaaaatattatggc
tatcccgacttccgggagggccagaaaaaaatcgttatgaatttgctggagggacgcgac
acgctcgggatcatgccgacggggggcgggaaatccatatgttatcaggttcccgcattg
ctgctgccgggacttacgctggtcatttccccgctgatttcactgatgaaggaccaggtg
gacgcgctgaccacggcgggaattccggccgcctatatcaacagcacactgagcggcaaa
gaagtgaatgaacgcatacgtgcggcgcgccggggagagctgaagctgctatacgtggcg
cccgagcggctggaactggactggttccgcctggaaatggccggactgtccatctcgtgt
gtcgcggtggacgaagcccactgtgtctcccaatggggacatgacttccggaccagttat
ctggcggtttccccctttgtgaacgagctgccggaacggccgattcttgccgcctttacc
gcaacggctacacccgaggttatggaagacatggtccggctgctgcggcttcgccagcca
ggcgtattcatgacaggactgggccgtgataatctggccatgtcagtgctgcgcggagag
aacaaacgcgagttcgtgctggattatacggcacagcactcccatcagccgggcatcgtt
tatgccgccacccgcaaagaggtggatgatctgtatcagcggctgcaggcttccggcatc
gccgccggacgttaccatgcagggatgagcgaccaggagcgggcggagagccaggaaggt
tttctctatgacgatatccgcgtcatggtcgccaccaacgcttttgggatggggatcgat
aagtcgaatgtccgttatgtcatccattacaatatgcccaaaaatatggaggcctacgta
caggaagcgggccgtgccgggcgggacggagagcccagccagtgtatcctgctcttcagt
gcgcaggatattatgacgcagaagttcctgatcgagcagaatccgcaggacacggaccgc
aaggccaatgaataccgcaagcttcagcagatgattgattattgctataccacccgctgt
ctgcgcagcgcccagctggattatttcggcgaggagcacggggacaagccctgcggaatc
tgcagctcctgcacggatgaacgtgagctggtggatatgaccgtggatgcgcagaagata
ttctcctgcatccaccgtatgcgtgaacgctatggtgtcgcgctggtatcctccgtcctg
aagggctcccgcaaccagaaggtgctgcagtacggcttcgagaatctgcctacccacgga
gccatgtccagccgcaccgagaaagagattaccgagagcatcaatgtgctgatctcggaa
ggatatctggccttatcggaaggccagtatcctgtggtgcggctgcagccgctggccgcc
gaagtgctgcgcggccagcgccaggtcctgcagcgggtggcccgggtgcgcagcaccgga
ggcagctccggcgggcgggaccgcagccgcgtgcgcgatctgtcgccgtcggcggttaat
gagacggtgttcgagcagctgcgcctgatccgccgcgagctggcggggcgcgagcatgtg
ccgtcctacattattttcaatgatgcgaccctgcgcgagatgagcgtggtttgtccgcag
acggaagcggaaatgctgagagtcaaaggggtcggtgaagtgaaataccgcaaatacggc
aagccgttcctggaattttttcaaaatgaaatgtaa
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