Paenibacillus graminis: PGRAT_23260
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Entry
PGRAT_23260 CDS
T03325
Name
(GenBank) hypothetical protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pgm
Paenibacillus graminis
Pathway
pgm03420
Nucleotide excision repair
pgm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pgm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PGRAT_23260
03430 Mismatch repair
PGRAT_23260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pgm03400
]
PGRAT_23260
Enzymes [BR:
pgm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PGRAT_23260
DNA repair and recombination proteins [BR:
pgm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PGRAT_23260
MMR (mismatch excision repair)
Other MMR factors
PGRAT_23260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C
Viral_helicase1
ResIII
DEAD
AAA_12
Motif
Other DBs
NCBI-ProteinID:
AIQ70242
UniProt:
A0A089MAD5
LinkDB
All DBs
Position
complement(5165470..5167431)
Genome browser
AA seq
653 aa
AA seq
DB search
MDKLEMEHEIINTLCKNNKKTESYSLIIQDKVREKTEQQLEYVLSPINKNVFLEACAGSG
KTEVVGMKTAYEISKWNFKNKGIAVLTFTNEATDTIKERVERFSGLSSMFPHYIGTLSAF
IHGFISQNFGYKFFKHKNRDGDKSYRLVDKNLEVFDNHWLKKYKIPYINNNAGHHELFAN
QIYFDNKINDVILYQSETKKTPLKEFYNSSDFQKFVNDYREKSGNKTALGFEYIKEQIAK
VKNSFFEDGFANFEDINNIALRILKRDSKLTELLASRFPIILVDECQDLSWVEMNILNEF
KKAGTVLHFIGDLNQSIYEFKNANPEITKAFLSDFDKYRLTDNFRSCHPIVELSNRLLGI
TLPIRGLGIDKVGEKSISYLEYNDLSVVTEQYQKFLIGVNISYEKSAILVRQQNLKQELE
TNQTESKHLLLDALQLWLQNTPTSQMLALELAGKQMQKWFGGSKTKKNYFCPNAIESAFQ
WRIFLKNFLEGCLANDRLINVGDIEYSIWYKNFNACFLTMIEKAYQSLADFDIEKRDFNT
LPKLRTPSGSAKNKIVIFNSKDNSNMVPINTIHSAKGKDFESVMVVSSRRNSGNSGGGHW
KHWLEKELESGRIGYVANTRAKYSLVWAVPTLKKQEKIEVESYGFKRITLKDI
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atggataagctagaaatggagcatgaaattataaatactttgtgcaaaaataataagaaa
acagaaagttattcattaataattcaagataaagtaagagaaaagacagagcaacaacta
gaatatgttctttctcctattaataaaaatgtattcttagaagcttgtgcaggaagcgga
aagacagaagttgttggaatgaaaaccgcgtatgaaattagtaaatggaattttaagaac
aaaggaattgctgtactcacgttcaccaatgaagctacagataccataaaggagcgggtt
gaaagattttcaggtttaagctcaatgttccctcattacattggtacattatcagctttc
atacatggttttatttcacaaaattttggctacaaattctttaagcataagaaccgagat
ggggacaaatcatacaggttggtagataaaaatttagaagtgtttgataatcattggtta
aaaaaatataaaataccctatataaataataatgcaggtcatcatgaattatttgcgaat
caaatttattttgataataaaattaatgatgttattttatatcaatcagagactaaaaaa
actccacttaaggagttttataactcatctgattttcaaaaatttgttaatgattataga
gagaagtcggggaataagacagcattaggatttgagtacataaaagagcagatagctaaa
gtgaaaaatagcttttttgaagatggttttgctaattttgaagatataaataatatagca
cttagaatcttgaagagggattcgaaactaactgaactccttgcttctcgcttcccaatt
atattagttgacgaatgtcaggatttatcatgggttgagatgaacattctcaatgagttt
aaaaaggctggtacagttcttcatttcataggagatcttaaccaatctatatatgagttt
aaaaatgccaaccctgaaataacaaaagcatttctatctgattttgataaatatcgtttg
acagacaattttagaagctgccatccaatagttgagctttcaaatagattgttaggcata
actttacctatccgtggtcttgggattgataaggtaggagaaaaaagtattagttatctg
gagtacaacgatttatcagtagtaacagaacaataccagaaatttttaattggagtaaat
atatcttatgaaaaatcggctattttggtgagacaacaaaatttaaaacaagaactagag
acaaatcaaacggaaagcaagcatctattattagatgctttacaactttggctgcagaat
actccaacatcacagatgttagcattggaacttgcgggtaaacagatgcaaaagtggttt
ggaggatctaagaccaaaaagaattatttttgtccaaatgcaatcgaatctgcatttcag
tggagaatttttttgaaaaatttcttagaaggatgtttagcaaacgatcgtttaattaat
gttggagatattgaatattccatttggtataagaactttaatgcttgctttttgacaatg
atagaaaaggcttatcagtcactagctgattttgatatagagaagagggactttaatacc
ttaccaaaattaagaaccccatctggttcagcaaagaataaaattgttattttcaattca
aaagacaattcaaatatggtaccgataaataccattcattcggctaaaggtaaagacttt
gagagcgtaatggtcgtctcaagccgtcgaaactcaggaaacagcggcggcggtcattgg
aaacattggctcgaaaaagagctggaatcaggaagaataggttatgttgctaatacaaga
gctaaatattcattggtttgggcagttccaactttaaagaaacaagaaaaaattgaagtt
gaatcttatggttttaaaagaattactttaaaggacatatag
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