Porphyromonas gingivalis ATCC 33277: PGN_2003
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Entry
PGN_2003 CDS
T00714
Name
(GenBank) single-stranded-DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
pgn
Porphyromonas gingivalis ATCC 33277
Pathway
pgn03410
Base excision repair
pgn03430
Mismatch repair
pgn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pgn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PGN_2003
03430 Mismatch repair
PGN_2003
03440 Homologous recombination
PGN_2003
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pgn03400
]
PGN_2003
DNA repair and recombination proteins [BR:
pgn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
PGN_2003
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
PGN_2003
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PGN_2003
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Toprim
DUF3881
Motif
Other DBs
NCBI-ProteinID:
BAG34521
UniProt:
B2RMC6
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All DBs
Position
2241193..2242947
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AA seq
584 aa
AA seq
DB search
MNYNWNLEPFTAEERSLGTIFCRELRLAPVVGCLLARRGIASVEEAKRFFRPRLEDLHDP
FLMKDMDKAVARLNRAVGRKEKIMIYGDYDVDGTTAVALVYKYLRATGCSETQLDYYIPD
RYDEGYGISYRGIDLAHSLGTKLIIVLDCGIKAVEKVAYAKSLDIDFIICDHHNPDETLP
DAVAVLDAKRADNTYPYEHLSGCGVGFKFMQAYARSNNLPESKLLPLLDLVAVSIASDIV
PIMGENRILAYYGLRQLNKRPCLGLQAIIDVCGLKKRRIDMNDIVFKIGPRINASGRMMN
GGKAVELLLSQDAVEAQSRTANIDEYNDQRRELDKDVTEQAIDILGELSDVDKKILVIYR
PEWHKGVIGIVASRMTERYSRPTIVMTKSGDFISGSARSVGGFDVYKAIEHCKDLLVNFG
GHPFASGLTIKEENLETFRKMITDYAEEAVSPELLVPQIDVDAEISIEEVNYKLLDNLKR
MGPFGPENSKPVFISRQLYDAGGSRAVGKASEHLKIDVRVGSGERHPVSGIAFNQAGHCN
EIKNGSFRLCYTIEENEFNGNKSLQLLVRDIKPEEESAINGKTR
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atgaattacaactggaatttggagccgtttaccgcagaggaacgttccctcgggacaata
ttctgtcgggagctaaggctcgcgcccgtagtggggtgcctattggcacgcaggggaata
gcttccgtagaggaagctaagcgtttctttcgcccaagattggaggatctccacgatcct
ttcctgatgaaggatatggacaaggctgtagctcgcctgaacagggcggtggggcgaaag
gaaaaaatcatgatttacggtgactatgatgtagacggtaccacggcagtggcactcgtc
tataagtatttgcgcgccacgggctgctccgaaacccaattggattactacattccggat
aggtacgatgagggttatggtatctcttatcgaggaattgatttggctcactctctcgga
acgaaactgataatcgtactcgactgtggtatcaaagccgtcgaaaaggtggcatacgcc
aagtcgcttgacattgattttattatctgcgaccatcacaatccggatgaaacgctacct
gatgccgttgcggtgctggatgccaaaagagctgacaatacgtatccttacgaacatctc
tccggctgtggagtcgggttcaagtttatgcaagcctatgctcggagcaacaatttgccc
gaatccaagctccttcctttgctcgacctcgtggctgtcagtatagcttcggatattgtc
cctatcatgggagagaaccgcatactcgcctattacggactgcgccaacttaataaacgc
ccttgtctcggcttgcaggctataatagatgtatgcggtctgaagaagcgaaggatagat
atgaacgacatcgtcttcaagatcgggcctcggatcaatgcttccggtcgtatgatgaat
gggggtaaggctgtggaactactactctctcaggatgctgtggaagctcaaagccgaacg
gccaatatagacgaatacaacgaccaacgccgtgagctcgacaaggatgtgacggaacag
gccatcgatattttgggcgagctatccgatgtggacaagaagatcctcgttatatatcgg
ccggaatggcacaagggcgttatcggcatagtggccagcaggatgaccgaacgctattcg
cgcccgacgatcgtgatgactaagagcggtgatttcatttcaggctcggctcgatccgta
ggagggttcgatgtgtacaaagccatcgaacattgcaaggacttgctggtcaatttcgga
gggcatccttttgcctccggtctgacgatcaaagaagagaatctggaaaccttccgaaag
atgattacggactatgccgaagaggctgtatctccggaactactggtgccacaaatagat
gtagatgccgaaatatccatcgaagaggtcaattacaaacttctcgacaacctcaagcgg
atgggaccattcggcccggaaaactccaagccggtctttatatcccgacaactgtatgat
gccggtggtagcagggctgtaggaaaagcttccgaacacctgaagatagatgtaagagtg
ggatcgggcgaacgccatccggtgagtgggattgcgtttaatcaggccggtcattgcaat
gagatcaaaaacggctcatttcgtctttgctacacgatagaagagaacgaattcaacggc
aacaaatcattgcaactattggtgcgcgatattaagcccgaagaagaatctgctattaac
ggaaaaacaagatga
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