Porphyromonas gingivalis ATCC 33277: PGN_2033
Help
Entry
PGN_2033 CDS
T00714
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pgn
Porphyromonas gingivalis ATCC 33277
Pathway
pgn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PGN_2033
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgn03019
]
PGN_2033
03009 Ribosome biogenesis [BR:
pgn03009
]
PGN_2033
Enzymes [BR:
pgn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PGN_2033
Messenger RNA biogenesis [BR:
pgn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PGN_2033
Ribosome biogenesis [BR:
pgn03009
]
Prokaryotic type
rRNA helicases
PGN_2033
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
Helicase_helical
DbpA
ResIII
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BAG34551
UniProt:
B2RMF6
LinkDB
All DBs
Position
complement(2276623..2278437)
Genome browser
AA seq
604 aa
AA seq
DB search
MKTFEELGIAKPFLKAIAELGFEQPMPVQEEVIPYLLGEDIDLIALAQTGTGKTAAFGLP
LLQKIDLSGGRPQALVLCPTRELCLQIADDLNSYSKYLSDVHILPVYGGTPIDAQIRALR
RGVQIVVATPGRLLDLMRREAVSLSDIHTVVLDEADEMLNMGFAEDLEQILADIPSERHL
LLFSATMPKEISKIAASYMKDPKEIVIGNKNEGNANIKHLYYMVSARHKYLALKRIADYY
PNIYGIVFCRTRKETQEIADQLIQDGYNADSLHGDLSQAQRDYVMQKFRVRNLQLLVATD
VAARGLDVNDLTHVIHFGLPDDVESYTHRSGRTARAGKTGLSIAICHVKEKGKIKNIERT
MQKQIERARIPSGAEICEKQLFNLADRIERVDIENTTAIDSVLNEVNKKLEWIEKDELIR
RVMALEFNRMLDYYQRAEDVEEVVERKKDEASRDRKNRRRGAGEAEEGMTRLFINFGKMD
QMFPNRLIELINRCIPGRVNIGRIDLMPRFAFFDVDEFEAKNVVETLNRYEVDGRRIHVE
YADAKKDYAGGKKGGDKNFSARRKDFDGRRSENSTSRKNKGRKEKPTEGRFYDKFDSKQR
KRRK
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacatttgaagaattaggcattgccaaaccgtttttgaaagcaattgccgaattg
ggcttcgaacagcccatgcctgtgcaggaagaagtaataccttatctcctcggagaggac
atcgacctgatcgctttggcacagaccggcacaggcaagactgccgctttcggccttccg
ctgctccagaaaatagatttgtcgggaggacgaccgcaggctttggtactctgcccgact
cgcgaactgtgtctacagatagcagacgacttgaacagctattccaagtatttgtccgat
gtgcacatcctgcccgtttacggaggtacacctatagatgcgcagatcagagccttgcgc
cgtggtgtgcaaatcgtcgtggcaacgcccggccgtctcctcgacctgatgcgccgtgag
gccgtcagcctgtcggacattcatacggtagtattggatgaagcggatgaaatgctcaat
atgggctttgcagaagatctggagcaaatcctcgcagatattccatccgaacgccatctg
ctattgttttcggctacgatgcccaaagagatctccaagatcgccgcttcgtacatgaaa
gaccccaaggaaattgtcatcggcaataagaatgagggcaatgccaatatcaagcatcta
tactacatggtctcggcacgccataaatatcttgcactaaagcgaattgccgactattat
cccaatatctatggtattgttttctgtcgcacccgtaaggaaacgcaggagattgccgat
caactgattcaggacggctataacgcagattctcttcatggcgatctcagtcaggctcag
cgcgactatgtgatgcagaagtttcgcgtccgcaaccttcaactgctcgttgccaccgat
gtggctgcccgcggattggatgtgaacgatctgacccatgtgattcacttcggtcttccc
gatgatgtagagagctacacccaccgaagcggtcgtacagctcgtgcagggaaaacaggt
ctttcgatcgccatctgccatgtcaaggagaaaggcaaaatcaagaatatagagcgcacg
atgcagaagcagatcgaacgtgcacgcatcccttccggagcagagatatgcgaaaagcaa
ctgttcaatctggccgaccgtatagaacgtgtggatatagagaacacaacggctatcgac
tctgtcttgaacgaagtgaacaagaagctcgaatggattgaaaaagacgaattgattcgt
cgggtaatggcattggagttcaatcgcatgctcgactattaccaacgtgccgaggacgtg
gaagaagtggtcgagaggaaaaaagacgaggcttcgagagatcgtaaaaaccgaagacga
ggagccggcgaagcagaagaaggaatgacccgtctgttcatcaattttggcaagatggat
caaatgtttcccaaccgactgatcgagctgatcaaccgttgtatcccggggcgtgtcaat
atcggacggatcgacctgatgccccgattcgctttcttcgatgtagacgagttcgaagcc
aagaatgtagtagaaaccctcaatcggtacgaagtggatggtcgccgcatccatgtagag
tatgcggatgccaagaaagactatgccggggggaaaaaaggtggagataagaacttttcc
gctcgtcgcaaagatttcgacgggcgacgtagtgaaaattccacttcacgtaaaaacaaa
ggtcgcaaagagaaaccgacggaaggacgtttctacgacaagttcgactccaaacagcgc
aagcgtcggaagtaa
DBGET
integrated database retrieval system
