Pseudobacter ginsenosidimutans: FSB84_03925
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Entry
FSB84_03925 CDS
T06126
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pgo
Pseudobacter ginsenosidimutans
Pathway
pgo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pgo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FSB84_03925 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pgo03400
]
FSB84_03925 (mfd)
Enzymes [BR:
pgo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FSB84_03925 (mfd)
DNA repair and recombination proteins [BR:
pgo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FSB84_03925 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QEC40883
LinkDB
All DBs
Position
complement(1003251..1006694)
Genome browser
AA seq
1147 aa
AA seq
DB search
MNLQSLLDAFKKDPRLFQLADKLSFARPQRIHCENLRGSAASFVISTIFQNPASSQLNHL
VVCEDAEKAAYLHNSLENLTNALNLYFFPSSFKNRKNFRLLNPSHVMLRTEALTRFAAQS
QGRAGMLITYPEALFEKVVLPNTLSGNIIYIKSGDTLDLVGLMDKLVGYGFDRTDFVYEP
GQFALRGGILDIYSFGNEKPYRVELFGNDVDSIRIFDPETQLSERKLLQVTIIPNVDTQF
DTADKISLFDFLPENTVVWMQDWSFTKERLIIQEEDLELFLTTVTPTQKARDAAGDEDTR
MEKTDTKPEDFVPALRIEQQLQSRHIVAFGHGKDFPEGDPAAHDIPVDIHFNTKAQPAFN
RQFDLLIRDLKSWSAKNFGLYLFAENPRQLERLNSIFEDLKAEIPFTPIPTSIHEGFIDE
DLKLVCYTDHQIFQRYHKYKVKQAYNKNKALTLRTLRELQPGDYVTHIDHGVGVYSGLQK
IETNGKLQEAVRIIYKDSDILYVNINSLHKISKYTGKEGSVPKVNKLGSDAWNRLKEKTK
TKVKEIAFDLIKLYAQRKAQQGFQHTPDNYMQTELEASFIYEDTPDQSKATADVKRDMEQ
PSPMDRLVCGDVGFGKTEIAMRAAFKTCVDGKQAAVLVPTTILAYQHYKSFSERLKDFPV
TVDYVNRFKSSKEKKETLKRLEEGKIDIIIGTHAILGKEVKFKDLGLLVIDEEQKFGVAH
KEKIKTLRTNVDCLTLTATPIPRTLQFSLMGARDLSIINTPPPNRQPIQTEVAVMNDDLL
RDAIYFETERGGQVFFIHNRIQGLAEMKVKLQGLCPDLSIGFAHGQLEGHELEEKILDFI
NKKYDVLICTNIVESGVDIPNVNTIIVNNAHHFGLSDLHQLRGRVGRSNRKAFCYLLAPP
MSTLPPDSRKRLQTLEQHSELGSGFQIAMRDLDIRGAGNMLGGEQSGFMAEIGFEMYQKI
LDEAIKELKRTEFRNLFKEEIARQEDYVQDCTIDTDLEILIPDSYVESITERLTLYTRLD
NCEDEPALQEFHQELGDRFGPVPPQVDDLFETVRARRSGVELGFEKMTLKDETLRCYFVN
KPDSPYFESPVFQQILNFVQTQVNNARLKQTDRSFLLIVTDIKSMNKLVAFLKRMQEFVS
AETAASK
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
atgaatttgcagtcgttgctcgatgcgtttaaaaaagacccccgcctttttcaattggcg
gacaagctctcttttgcccggccccaacgcatccattgtgagaatcttcgcggcagtgct
gccagttttgtgatcagcaccatctttcaaaatcccgcatccagccagttgaaccacctt
gtggtttgtgaagatgccgaaaaagcggcttacctccataattcactggagaacctgacc
aatgcactcaatctttatttcttcccttcttctttcaagaacaggaagaatttccggttg
ctgaatccctcgcatgtgatgttgcgcacggaagcgcttacacgtttcgctgctcaatct
caaggcagggccgggatgctcatcacctatcctgaagcgctcttcgagaaagtagtactg
cccaatacactcagcgggaatatcatctacatcaaatccggtgatacactggacctcgtg
gggctcatggataaactggttggttatggtttcgatagaacggatttcgtgtacgagcca
ggccagttcgcgctgcgcggcggtattctcgatatctattctttcggaaatgaaaaacct
taccgggtggagcttttcggaaatgatgttgacagtatccgcatcttcgatccggaaacc
cagctcagtgaacggaagctgctgcaggtgaccatcattccaaatgtagacacacagttc
gatactgccgacaagatctctctcttcgatttcctgccggagaataccgttgtgtggatg
caggactggtcctttaccaaagagagactgatcattcaggaggaagacctggagcttttt
cttaccaccgttacgcccacgcaaaaagcgcgtgatgctgccggtgatgaagacacccgc
atggagaaaacggatacaaaaccagaagattttgtacctgcactccggatagaacaacaa
ttacaatcaaggcatatcgtggctttcggccatggcaaggatttccctgaaggagatcct
gcggcccacgatatcccggttgacatacatttcaatacaaaggcgcagcctgcattcaac
aggcagttcgacctgctgatccgggatctcaaaagctggtcagcaaagaacttcgggctc
tatctttttgcagagaatccgcgccagctggaacgcctcaacagcatcttcgaagatctg
aaggcggagatccccttcacacccatacctacatccatccatgaaggcttcatcgatgaa
gacctgaaactggtttgctatactgaccaccagatcttccagcgctatcataagtacaag
gtcaaacaggcttacaataagaacaaagcccttacactccgcaccctgcgcgagttacag
cccggcgactatgttacgcatatcgatcacggtgtgggcgtatacagcggtttacagaag
atcgagaccaatggaaaactgcaggaggctgtacggatcatttataaggacagtgatatc
ctgtatgtgaatatcaactcactgcacaagatctccaaatacaccggcaaggaaggttcc
gtgccgaaagtgaacaagctgggtagcgatgcctggaaccggctgaaggaaaaaacgaaa
acgaaggtcaaagagattgccttcgatcttattaagttatacgcgcaaagaaaagcccag
caagggtttcagcatactcccgacaattacatgcaaactgagctggaggccagcttcatt
tacgaagacacaccagaccagagcaaggctactgccgatgtgaagcgtgatatggaacaa
ccatctccgatggaccgtcttgtttgcggcgatgtgggtttcggcaaaaccgagatcgcg
atgcgcgccgccttcaaaacatgcgtggacggaaagcaagctgctgtgctggtgcctacc
actatcctcgcttaccagcattacaaatctttcagtgaacgtctgaaagattttcctgta
acagtggattatgtgaaccgtttcaaatcttcaaaagaaaagaaagagactttaaaaaga
ctggaagaaggaaagatcgatatcatcatcggtacgcatgccatactgggcaaagaagtg
aagttcaaagaccttggcctgctcgtgatcgatgaagaacagaaattcggcgtggcgcat
aaagagaagatcaaaacactccgcaccaatgtggattgtcttaccctaacggcaacccct
atcccaagaacattgcagttcagcctgatgggcgctcgcgatctcagtatcatcaacacg
ccgccgccgaacaggcagccaatccagacagaagtggctgtgatgaacgatgatctgctc
cgggacgccatttatttcgagactgaacgtggcggacaggtcttcttcatccataaccgg
atccaggggctggcggaaatgaaagtgaaactgcagggcctttgtcctgatctcagtatc
ggtttcgcgcatggccagcttgaggggcatgagttggaggaaaagatcctggacttcatc
aacaagaaatacgatgtactcatctgtaccaatatcgtggagagtggcgtggatattccg
aatgtgaataccattatcgtgaacaatgcgcatcatttcggactgagcgatctgcaccag
ttgcgtggccgggtaggaagaagcaatcggaaagccttctgttacctgctggcgccgcca
atgagcacattgccgcccgattcccgcaaacgcctgcaaacactggaacagcacagcgag
ctaggtagcggcttccagatcgccatgcgcgaccttgacattcggggcgccggtaatatg
ctgggtggtgagcagagcggcttcatggccgagataggattcgagatgtaccagaagatc
ctggacgaagccatcaaagaactgaagcgaaccgaattccgtaacctcttcaaagaagag
attgccaggcaggaagattatgtgcaggattgcaccatcgataccgatctcgaaatcctg
atccccgatagttatgtggaaagcatcaccgaaagattgacgctgtacaccaggcttgat
aactgtgaagatgagcccgccctgcaggaatttcaccaggaactgggtgatcgtttcgga
cctgttccgccccaggtggatgatctctttgaaactgtacgcgcccgaagatcgggtgtg
gaactgggttttgaaaagatgacattgaaagatgaaacactgcgttgttatttcgtgaac
aaacctgattcgccttattttgaatcacctgtattccaacagatcctcaactttgtgcaa
acgcaggtgaacaatgcaagactgaaacaaacagacaggtctttcctgctgatcgttacc
gatataaagagcatgaacaagctggtggcattcctgaaaaggatgcaggagtttgtgagt
gcagaaacagcagcatctaaataa
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integrated database retrieval system
