Pseudobacter ginsenosidimutans: FSB84_08210
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Entry
FSB84_08210 CDS
T06126
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pgo
Pseudobacter ginsenosidimutans
Pathway
pgo03420
Nucleotide excision repair
pgo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pgo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FSB84_08210
03430 Mismatch repair
FSB84_08210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pgo03400
]
FSB84_08210
Enzymes [BR:
pgo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FSB84_08210
DNA repair and recombination proteins [BR:
pgo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FSB84_08210
MMR (mismatch excision repair)
Other MMR factors
FSB84_08210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
PDDEXK_1
AAA_19
UvrD_C_2
MecA
AAA_11
Motif
Other DBs
NCBI-ProteinID:
QEC41677
LinkDB
All DBs
Position
complement(1995682..1998861)
Genome browser
AA seq
1059 aa
AA seq
DB search
MSIRREQLLEKFQAEYAHLNEEQKLAVDTIEGPVMVIAGPGTGKTQILASRIGKILLETD
SLPQNILCLTYTEAGVVAMRKRLQRFIGSDAYKVNIYTFHAFCNDIIQENLSLFEKTALD
PVSDLERIEMFTQLIDAFPKAHPLKRYRGDVYFEIKNLQSLFSTMKKEGWTSAFIIEKID
EYLKDLPNRDGFTYKRAYKQHKPGDLNQNRIDEETEKMEKLRAAVMEFDNFQQLMRARNR
YDFDDMINWVIRSFEENKTLLARYQEQYLYILVDEYQDTSGTQNRLVELLLSFWDTPNIF
VVGDDDQSIYRFQGANVENMLSLAHTYKDDLLKVVLTKNYRSTQPILNVAQSLINRNNER
LIRQIPGLTKELRASHPEMMGLEHMPSIKEYESQRQEMIGITKEIKTLLLQGVQPGRISV
IYKENKYGEELTTYLLLQNIPVYSKRNINILELPLVNKLMLLLRYLATEHDIPYSGDEML
FEILHFDWFNIHPIEIAKLSSEVADKQFTSEKISLRRLLFERTSRPPKDLFTVAPDPHLK
QASMILEKMVRGISNLTLQQMFELIIREAGVLARVMESEEKIWELQVITGLFDFVQEERR
RQPNMSVQQFVNIIDLMEREGLPLPLVRVSGSDKGVNLLTAHGSKGLEFEHVFIAGANAA
FWEKKRKPGGGYKLPDTIFTATSQSTVKEEAGDDEELRRLFYVALTRAEQYLTVSYSRFK
SDGRELEPSMFIAEILEHHDIPVEKVFVGDEVQAEFQALLLSRNAAPEIGELEEGFISER
LNAFVMNLTALNNYLKCPLEFYFKNLVRIPAPKNENTEFGSAVHHALEQFFRKMKANGEQ
FPLKEVFLEDFKWYMNRHRESFTREQFERRFEYGLEVLSNYYDEYIFRWSKVVTIEQNIR
NVVVAGVPLKGKLDKMEFDGKKVNVVDYKTGDPDKNADKFLRFGEKPDKSPHGGDYWRQA
VFYKLLVDNYDKKEWTVVSTEFDFIEPSKKKKGYHKETVVIRPEDITTVTQQIRTVWDKI
HARDFYTGCGKEDCHWCNFVKTNNLAIALHELKTEDELE
NT seq
3180 nt
NT seq
+upstream
nt +downstream
nt
atgtccatacgccgagagcaactcctggaaaaattccaggcagaatacgcccatctgaac
gaagagcagaaactggcagtagatactattgaaggccccgtaatggtgattgccggcccg
ggcacaggaaaaacacagatcctggccagccgcatcggaaagatcctgctggaaactgac
tctttaccacagaatattctctgtctcacttatacggaggcaggagtggtggctatgcgc
aaaagacttcaaagatttatcgggtcggacgcctacaaagtgaacatctatactttccac
gctttttgtaacgatatcatccaggagaatttatcattgttcgagaaaacggcactggat
ccggtgtctgacctggagaggatcgaaatgttcacgcaactgatcgatgctttccccaag
gcacacccgctgaaaagatatcgtggcgatgtgtatttcgaaataaaaaaccttcagagt
cttttcagtacgatgaaaaaggaaggctggacttccgccttcattattgaaaagatcgat
gaatacctcaaagatcttcccaatcgcgatggcttcacctacaaacgcgcttacaaacaa
cataagcccggcgatctcaaccagaacaggatcgatgaggaaacagaaaaaatggaaaaa
ctccgcgcagccgtgatggagttcgacaattttcaacaactcatgcgcgcccgcaaccgg
tacgacttcgatgatatgatcaactgggtgatccgcagcttcgaagagaacaagaccctg
ctggcccgttaccaggaacaatacctttacatcctcgtggacgaataccaggatacttcg
ggtacgcagaaccgtttggtggaactgcttctcagcttctgggatacacccaatatcttt
gtggtgggcgatgatgaccaaagtatctaccgcttccagggcgccaacgtggaaaacatg
ttatccctggcgcatacctataaagatgatctgctgaaagtggtgctcaccaagaactac
cgctccacccagccgatactgaatgtagcacaatcgctcatcaaccgcaacaatgaaaga
ctgatccgacagatccccggcctcaccaaggaattgcgcgcttcgcatcctgaaatgatg
gggctggaacatatgccgtccatcaaggagtatgaatcgcagcggcaggaaatgatcggc
atcaccaaagagatcaaaacgctcctgctgcaaggcgttcagcccggccgcatcagcgtg
atctataaagagaacaaatacggagaagagctcaccacttacctgcttttgcagaatata
ccggtatacagtaaacgaaatatcaatattctcgaactgccactggtgaataagctgatg
ctcctgctccgctacctggccaccgaacatgatattccctacagcggggatgaaatgctc
ttcgagatcctgcacttcgactggttcaatatccatcccatcgaaattgctaaactcagt
tcggaagtagccgataaacaattcaccagcgagaagatctccctccgcaggctgctgttc
gagagaacaagccgcccaccgaaagatcttttcactgttgcgccagacccgcacctgaag
caggccagcatgatccttgagaagatggtgcgtggtatttccaatcttactttacaacag
atgttcgagctgatcatccgcgaagccggtgtactggcccgtgtaatggaaagcgaggaa
aagatctgggaactgcaggtgatcaccggccttttcgattttgtacaggaagaaagaaga
cgccagccaaatatgtctgtgcagcaattcgtgaatatcatcgatctgatggaacgcgaa
ggattgcctttaccactcgttcgcgtgagcggcagcgataaaggcgtgaacctcctcaca
gcacacggctccaagggcctcgagtttgaacatgtattcattgcaggtgccaatgccgcc
ttctgggaaaagaaaagaaaaccgggcggcggttacaaactgccggataccatcttcaca
gccacgtcgcaatccacggtgaaagaggaagcaggtgacgacgaagaactgcgacgcctc
ttctacgtagcattgacgcgcgcggagcaatacctcactgtttcgtatagtcgcttcaaa
tcggatggccgtgaactggagccttccatgttcattgccgagatcctggagcaccatgat
attccggtagaaaaagtatttgtgggcgatgaagtgcaggccgagttccaggcactattg
cttagcaggaatgcagccccggaaataggagagctggaagaagggttcatttcagaaaga
ctgaatgctttcgtgatgaacctcaccgccctcaacaattacctgaaatgcccgctggaa
ttctatttcaagaacctggtgcgcattcccgcgccgaagaatgagaacacggaattcggt
tcggccgttcaccatgcgctggaacagttcttccgcaagatgaaagctaatggagaacag
ttcccgctcaaagaagtgttcctggaagacttcaaatggtacatgaaccgccaccgcgaa
agcttcacccgtgaacaattcgaaagaagatttgaatacggccttgaagtgctcagcaat
tattacgatgaatacatcttccgctggagcaaagtggtaaccatcgaacaaaatatccgc
aatgtggtagtggcaggcgttcccctcaaagggaagctggataaaatggaattcgacggc
aagaaagtgaatgtagtggactataaaacgggtgatcctgataagaacgcagataagttc
ctgcgcttcggtgagaagcccgataaaagcccgcacggcggcgattactggcgtcaggct
gtcttctacaaattactggtggataattacgataagaaagaatggacagtggtcagtact
gaattcgattttatcgagcccagcaaaaagaaaaaaggataccataaggaaactgtggtg
atcaggccggaagacatcactaccgttacacaacagatcagaaccgtgtgggacaagatc
catgcgcgcgatttctataccgggtgtggtaaagaagattgccactggtgcaattttgta
aaaaccaataatctcgccattgccttgcatgagcttaagacggaagatgaactggaatag
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