Pseudobacter ginsenosidimutans: FSB84_15535
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Entry
FSB84_15535 CDS
T06126
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
pgo
Pseudobacter ginsenosidimutans
Pathway
pgo02020
Two-component system
pgo02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pgo00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
FSB84_15535 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
FSB84_15535 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pgo03021
]
FSB84_15535 (rpoN)
Transcription machinery [BR:
pgo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
FSB84_15535 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
LacI
CbiD
Motif
Other DBs
NCBI-ProteinID:
QEC43034
LinkDB
All DBs
Position
3848422..3849834
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AA seq
470 aa
AA seq
DB search
MIYQHLTQKQQVRILPQQIQLLNLFHLNTLELEHRIQQELEENPLLEEAPADDNSLREES
EVIQDFADWDEFGYDDIPDYRTEYANYFTGEAIPDRPIAQVADFREHLKEQCRLLLMEEK
DFQQVCYLIDSLNENGMLDQELSSLAEDMSFKYGEWIEAPQLERLLKVIQTLDPAGVGAR
DIRECLLLQLERKNTHRPDVAAAFKLVHDHFNDLKNRQLDKIMESIGLEEDELRIVLELI
AALPLQPIMAATEESGNRNYIVPDFVIAVEGDTIDVSLSRQRSSSLHISHSWMENVKNQC
AKDDKAAGQYLKSKLQAAEWFISAIQQRESTMLRVMRTIVKWQYEYFKEGDPLMMKPMIL
KNIAREVGVDISTVSRITSNKYAATPFGNILLKDLFSEGLANEQGEVVSNRIIQHALEEA
IAAEDKKSPFTDHQLVVILAKNGYKIARRTVAKYRELLRIPTAQMRAVWG
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atgatctatcaacaccttactcagaaacagcaggtacggatactgcctcaacagatccag
ttgctgaacctgtttcatctgaatacgttggagctggaacatcgcatacagcaggaactg
gaagaaaatcccctgctggaggaagcacccgcagatgataacagcctcagagaagaaagc
gaagttatacaggattttgcagactgggatgaatttggttacgatgatatcccggactac
aggaccgagtatgccaattattttacaggtgaagccattcctgaccggcctattgcgcag
gtggctgattttcgcgagcacctgaaagagcaatgcaggctgctgctgatggaagaaaag
gattttcagcaggtctgctacctgatcgattctctgaacgagaacggcatgctggaccag
gagctcagctccctggcggaagacatgagttttaagtacggcgaatggatcgaggcgccg
caactggagcgtttgctcaaagtgatccaaacacttgatcctgccggagtgggagcccgc
gatatccgcgaatgcctgctgctgcaactggaacgaaagaacacacaccgtccggatgta
gcggccgctttcaagctggtgcatgatcatttcaatgatctgaagaaccgtcagctcgac
aagatcatggagagcataggactggaagaagatgaattacggatcgtgctggaactgatc
gcggcattgcctttgcaacctattatggcagcaacagaggaatccggtaacaggaattat
atcgttcctgatttcgtgatcgcagtggaaggtgataccatcgatgtgagcctttcgcgc
cagcgttcctcttcgctccatatcagtcacagctggatggagaacgtaaagaaccagtgt
gcaaaggatgataaggcggcaggacaatacctcaagagtaagctgcaggccgcagaatgg
ttcatttcggctatccagcaacgtgaaagcaccatgctccgcgtgatgcgcaccatcgtg
aaatggcaatatgaatattttaaggaaggtgatccgctgatgatgaaaccaatgatcctg
aagaatatcgccagggaagtgggcgtggatatttcaaccgtatcccgcatcaccagcaac
aaatatgcagcaacgcctttcggtaatattttgctgaaagacctcttctcggaaggactg
gccaacgaacagggagaagtagtgagcaaccggatcatccagcacgcactggaagaagcg
attgctgcggaagacaagaagagccctttcaccgatcatcaactggtggtgatccttgca
aagaacggttacaagatcgcgagaagaacagtggccaaataccgtgaactgctgaggata
cctactgcgcagatgcgcgccgtttggggatga
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integrated database retrieval system
