Pseudobacter ginsenosidimutans: FSB84_17495
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Entry
FSB84_17495 CDS
T06126
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pgo
Pseudobacter ginsenosidimutans
Pathway
pgo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FSB84_17495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgo03019
]
FSB84_17495
Enzymes [BR:
pgo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FSB84_17495
Messenger RNA biogenesis [BR:
pgo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FSB84_17495
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
QEC43401
LinkDB
All DBs
Position
complement(4415969..4417684)
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AA seq
571 aa
AA seq
DB search
MLFEQLPIAAPILKALAEQGYSNPTPIQEQSIPVILQQKDILGCARTGTGKTAAFAIPII
QLLAEEKAKAPVKGIRALVLTPTRELALQIQESFDAYGKYTNIRQVVIFGGVSQQSQVND
LRKGCDILVATPGRLLDLMQQNIISISQIRILVLDEADRMLDMGFIHDVKKVIAKIPAQR
QTLFFSATMAPEIRKLSDTILKEPVYVQVTPVASTAETVEQTLYYVDKKNKNPLLVHILK
DPAITSSIVFSRTKHGANKIAKALSNAGIRAEAIHGNKSQAARQRALQLLKEREIRVLVA
TDIAARGIDVEELSHVINYDLPNIPETYVHRIGRTGRAGASGLAISFCDQEEREFLRDIQ
KLIKKNVPVIAEHPFKPGSPIVKEPVVAQAPAIAKTQANSKPLQQHNQQSRNNRNRNKER
QSQGESRNTSNGRQQQPQVKQQTNQGQQPRPQRPVAMQTTTGNAQQKMVVQKAQPAVQQQ
QKAVVQNNNGTQQKGNMQKPAVQQQGSRPQPSQQKSADRPKQQPQQQQANQSKPKYEYSS
KPAANTELNQAPASFKLKNRFGNSEDEAERW
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
ttgttattcgagcaattaccaattgcagcgcccatattgaaggcgttggcagaacaaggg
tacagtaaccctactcccattcaggaacagtcgatccccgttatactgcagcagaaagat
attcttggctgcgcacgtacaggcacaggcaaaaccgcggccttcgcaattcccatcatc
cagttactggctgaagaaaaagcgaaagcacctgtaaaaggtatccgcgcactcgtactc
actcctacccgtgaactggctttacagatccaggaaagcttcgatgcgtatggaaagtat
accaatatcaggcaggtagtgatctttggcggcgtttcccagcaatcgcaggtgaacgac
cttcgtaaaggttgcgatatcctcgtggccactccgggcagattgttagacctgatgcag
cagaacatcatcagcatcagccagatcaggatcctggtcctggacgaagcagaccgcatg
cttgatatgggctttattcacgacgtgaaaaaagtgatagcgaagatccctgcacaaaga
caaacacttttcttctccgccaccatggcgcctgagatcaggaagctctccgataccatt
ctgaaagaaccggtatacgtgcaggtgacaccagttgcatctacagcagaaacagtggaa
caaacactgtactatgtagacaaaaagaacaagaatcccttgctggtgcatatcctgaaa
gatccggccatcacatcttccattgtgttcagccgtaccaagcatggagccaacaagatc
gcgaaagcgctttccaatgcaggcatcagggcggaagccattcacggcaacaaatcacag
gcagcacgtcagcgtgcgcttcagttactgaaggaaagagagatccgcgtactggtggcc
accgatatcgcagcacgcggtatcgatgtggaagagctcagtcatgttatcaactacgat
cttcccaatatccctgaaacatatgttcacaggatcggaaggaccggacgtgcaggcgca
agtggtctcgccatttcattctgtgaccaggaagaaagagagttcctccgcgatatccag
aagctgatcaaaaagaatgttcctgttattgcagaacatcctttcaagccaggcagcccg
atcgtaaaagaaccagtggtagcgcaggctccggccatcgccaaaacacaggctaattcc
aaacctttgcagcagcataatcagcaaagcaggaataatagaaaccggaacaaggaaagg
caatcacagggtgaatcacgcaataccagtaatggccgccagcagcagccgcaggtaaag
cagcagacgaaccagggtcagcaaccccgtccgcaaagaccggttgcaatgcagacaact
accggcaatgcacaacagaaaatggtagttcagaaagcgcagcctgctgtacagcagcag
caaaaagcagttgttcagaacaacaacggcacgcaacagaaagggaatatgcaaaagccg
gctgttcagcaacagggcagcaggccacagccgtcccagcagaaatctgctgatcgcccc
aaacaacagccacagcagcaacaggccaatcagtccaaaccaaagtacgaatacagcagc
aagcctgcagccaatacagaattgaaccaggcgcctgcttccttcaaactgaagaaccgc
ttcggcaattcagaagatgaagctgaacgctggtaa
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