Pseudobacter ginsenosidimutans: FSB84_19410
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Entry
FSB84_19410 CDS
T06126
Name
(GenBank) RNA polymerase sigma-70 factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pgo
Pseudobacter ginsenosidimutans
Pathway
pgo02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pgo00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
FSB84_19410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pgo03021
]
FSB84_19410
Transcription machinery [BR:
pgo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
FSB84_19410
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4_2
Sigma70_r4
Sigma70_ECF
GerE
HTH_24
HTH_23
HTH_40
HTH_11
HTH_10
HTH_28
TnsD
HTH_38
HTH_16
HTH_20
HTH_3
HTH_Crp_2
HTH_7
PF0610-like_N
HTH_Tnp_ISL3
DUF2774
HTH_29
Motif
Other DBs
NCBI-ProteinID:
QEC43741
LinkDB
All DBs
Position
4940167..4940775
Genome browser
AA seq
202 aa
AA seq
DB search
MRKIRKNRQLPEDPSYHEIELLQKIAEGNREAFHALYHHYRNKIYYIASRMLQSDAAAED
VLQEIFIKIWVNREKLRNMDYFSTYLNTIVRNHLYNQFRKKANEETYLLRLLPDPAEPSQ
PFDETAIKELKQLLANAVAALPPRQQKVFQLSREQGLTHAAIAAKLGISPETVKKHIMEA
LRFIKSYLIAHGAALTVWLLLS
NT seq
609 nt
NT seq
+upstream
nt +downstream
nt
ttgcgaaaaatccgtaagaaccgacaattgccagaggacccgtcatatcatgaaatagag
ctgctgcaaaagatcgcggaaggaaacagggaagcatttcatgcgctttaccaccattac
cgcaataagatctactatatagcttccaggatgcttcaatccgatgcagctgcggaagat
gttttacaggagatctttatcaagatttgggtgaaccgggaaaaactccggaatatggat
tatttcagcacctacttgaatacgattgtccgcaatcatctgtataatcaatttcgcaaa
aaagcaaacgaggaaacttatctgctccgtctactgcctgatcctgctgaaccttctcag
cctttcgatgaaactgctatcaaagaattgaaacaactgcttgccaatgctgttgcagcc
ctgcctccccggcaacagaaagtttttcagcttagccgtgaacagggtctcacacatgct
gccattgctgcaaaacttggaatttctcctgaaacagtgaagaagcatatcatggaagca
ttgcgttttatcaaatcatatcttattgcgcatggagctgcgctcactgtctggctgctg
ctttcataa
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