Pseudobacter ginsenosidimutans: FSB84_19955
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Entry
FSB84_19955 CDS
T06126
Name
(GenBank) AAA family ATPase
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
pgo
Pseudobacter ginsenosidimutans
Brite
KEGG Orthology (KO) [BR:
pgo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pgo03009
]
FSB84_19955
03012 Translation factors [BR:
pgo03012
]
FSB84_19955
Enzymes [BR:
pgo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
FSB84_19955
5.6.2.5 RNA 5'-3' helicase
FSB84_19955
Ribosome biogenesis [BR:
pgo03009
]
Eukaryotic type
Other ribosome biogenesis factors
FSB84_19955
Translation factors [BR:
pgo03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
FSB84_19955
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
AAA_30
AAA_19
Viral_helicase1
ResIII
Helicase_RecD
DEAD
UvrD-helicase
SLFN-g3_helicase
AAA_22
PhoH
UvrD_C_2
nSTAND3
AAA_16
PIF1
Herpes_ori_bp
T2SSE
AAA_25
ATPase_2
AAA_14
AAA_24
SRP54
AAA_5
DAP3
cobW
NPHP3_N
HEM4
ATPase
NACHT
DnaB_C
TraI_hel_assoc_N
AAA_28
AAA_7
GpA_ATPase
Flavi_DEAD
DUF7247
Pannexin_like
AAA_33
Motif
Other DBs
NCBI-ProteinID:
QEC43841
LinkDB
All DBs
Position
5078650..5080548
Genome browser
AA seq
632 aa
AA seq
DB search
MDYFKKLLDLLKTERQEDEAMYRQLSSSLSVNDRREAGLSWYPVAIRGTEPTKGDYITVE
LERTTNQDIPHQFRTGASAALFSNHNREHDRVEGVVNYVGANKIKITLRTDELPEWSRNG
KLGVDLLFDDNSYDEMQQALRQAIALNEKREEGRLVRILTGSQEPVFENYVSPVPFPSLN
PSQQEAVNKILSAEDLAIVHGPPGTGKTTTLVQAIKALVAKDKQQVLVVAPSNTAVDLLS
EKLSDAGLNVLRVGNPARVNERLLSLTMDHKMAEHTANKEIKRLKKQAGEFKDMAHKYKR
NFGKAERDQRKALFDEARNIMKQVEKTEQYIVDDLLAKADVITATLIGANHYLVRERKFH
TVVIDEAGQALEPATWVPVIKARKLILAGDHLQLPPTVKSNEAAKNGLTLTLLEKLVERY
PQSVVMLNEQYRMNRLIMGYSAATFYDNQLKAHASVENHTLNNDEHPLQFIDTAGCGFEE
KTSGNAISNPEEAAFSINYLKQLSAEKQWDAAFPTVGIISPYRRQIDELKAMLQQTPELL
AFQHRITINTIDSFQGQERDMVLISMTRSNNDNRIGFLSEIRRMNVAMTRARKKLVVVGD
SSTLSQHDYYAGFIAYAEQQEAYKSAWEYMGV
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atggattatttcaagaagctgctcgatctcctgaaaacagagcggcaggaagatgaagca
atgtaccgccagctcagttcctccctttccgtgaacgaccgccgggaagccggtctcagc
tggtatcccgtggccatccgcggcaccgagcccacgaagggcgactatataacggtggag
ctggaacgaactaccaaccaggacattccccaccagttccgcaccggcgccagcgccgcc
ctgttcagtaatcacaaccgggaacatgacagggtggaaggcgtagtcaactacgtaggc
gccaacaagatcaagatcacactccgcacggatgaactgcccgaatggagccgcaacggc
aagctcggcgtagacctcctctttgatgataacagttacgatgaaatgcagcaggcgctc
cgccaggccatcgccctgaatgagaaaagggaagaaggaagactggtgcggatcctcacc
ggctcacaggaacctgtattcgaaaattatgtatctcccgttccctttccttcgctgaac
ccttcgcagcaggaagcagtgaataagatcctcagcgcggaagacctggccatcgtgcat
ggccctcctggtacgggcaagaccaccacgctggtgcaggccatcaaagcactggtggcg
aaagataaacagcaggtgctggtagtggcgcccagcaatactgcggttgaccttctcagt
gagaagctctccgatgcaggtcttaatgtgctgcgcgttggcaatcccgcccgtgtgaat
gaaagactgctaagtctcaccatggaccataagatggcggagcatacagcgaacaaggag
ataaaaagactgaagaaacaggccggcgagttcaaagacatggcccataaatacaagagg
aatttcggaaaggccgagcgcgaccagcgcaaagccctctttgatgaggcacgcaatatc
atgaagcaggtggagaagaccgaacaatatatcgtggatgatcttcttgccaaagccgat
gtgatcaccgctactttgatcggcgccaatcattacctggtgcgcgaacgaaaattccat
acagtagtgatcgatgaagccggacaggcgctggagcccgccacctgggtgccggtgatc
aaagctcgcaagctgatcctcgcaggcgatcacctgcaactgccgcccaccgtgaaatcc
aatgaagcagcgaagaacggtctcaccctcacattgctggaaaagctggtggagcgctat
ccgcagtcagtagtgatgctgaatgaacagtatcgcatgaaccgcctgatcatgggctat
tcagctgccaccttctacgataaccagctcaaggcacatgcctcggttgaaaatcatacg
ctcaacaatgatgaacatcctctgcaattcatcgatactgcaggatgcggatttgaagag
aagaccagtggcaatgctatctccaatccggaagaagccgcattcagtatcaattacctg
aaacagctgtctgctgaaaagcagtgggatgccgcttttccaacggtgggcatcatttcg
ccctacagaagacagatagatgagctgaaagccatgttgcagcaaacaccggagctgctg
gcattccagcatcgcatcaccatcaatactatcgacagcttccagggacaggaacgtgat
atggtgctgatcagcatgacgcgcagcaacaacgataaccggatcggtttcttatcagag
atcaggcgcatgaatgtagccatgacaagagccaggaaaaaactggtagtggtgggagac
agcagtacactgagtcagcatgattattacgcagggttcatcgcttacgcagaacagcag
gaagcttacaagagcgcctgggaatatatgggcgtttag
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