Pseudobacter ginsenosidimutans: FSB84_21460
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Entry
FSB84_21460 CDS
T06126
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pgo
Pseudobacter ginsenosidimutans
Pathway
pgo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FSB84_21460 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgo03019
]
FSB84_21460 (pnp)
03016 Transfer RNA biogenesis [BR:
pgo03016
]
FSB84_21460 (pnp)
Enzymes [BR:
pgo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
FSB84_21460 (pnp)
Messenger RNA biogenesis [BR:
pgo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
FSB84_21460 (pnp)
Transfer RNA biogenesis [BR:
pgo03016
]
Prokaryotic type
tRNA degradation factors
FSB84_21460 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
KH_1
PNPase
S1_RRP5
KH-I_KHDC4-BBP
OB_RRP5_4th
KH_Vigilin
NTS
KH_NusA_1st
Motif
Other DBs
NCBI-ProteinID:
QEC44119
LinkDB
All DBs
Position
5472077..5474233
Genome browser
AA seq
718 aa
AA seq
DB search
MLSQPTGVTFDIGGGRMVTVETGKLARQAHGAVTVRQGNCIILATVVANKEPREGQEFFP
LVVDYNEKFASAGRIPGSFFKREGKLNDYEVLVSRLIDRSLRPLFPEDYFCDVQVLVTLV
SSDKEVMPDALACLAASAALAVSDIPIKEIISQVRVARVEGEFIVNPLRAQLEKADMDFL
IAATEKNLMMVEGEAEECAEEDLVKALEIAHEAIRIQIKAQAELRDKAGVAGKRDYTKPV
VNEELQAKVKAFAGDQISAIARSASGKNERSDAFDTLKKALIESLGEEVEDDVKKLAKKY
FEDLKWENVRNVILDERIRLDGRKLDEVRQLAMEVDVLPSPHGSALFTRGETQSLTTVTL
GTPLDELLVESAATSDYTKFILHYNFPPFSTGEVKMMRGPGRREVGHGNLAMRSLKQMMP
GTEYPYTVRIVSDILESNGSSSMATVCAGSLALMDAGVPFPKHVGGIAMGLITRADNKYA
ILSDILGDEDHLGDMDFKVTGTREGICGVQMDIKVDGLSMDIMREALDQARRGRLHILSA
MYEALPAHREEVKPHAPRMEKLFIDKEFIGAVIGPQGKIIQEIQRETGTTINIEEVGNYG
EVSVFSPAKEGLDKAVAWIKGIVAVPEVGSVYEATVKGIKEFGAFVEFLPGKQGLLHISE
ISWKRLESMEGVLKEGDKVKVKLIGIDHKTGKFKLSRKALMPKPEGKRPENNGAPAGE
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgctctcacaacctacaggtgtgaccttcgacataggtggcggccgtatggttaccgtt
gaaaccggtaaactcgctcgccaggcacatggtgccgtaaccgttcgtcagggcaactgc
attatcctcgctactgttgtagccaacaaagaacccagagaaggacaagagttctttccc
ctggtagtggattataatgagaaattcgcttcagcaggccgtatccctggctctttcttc
aaacgtgaaggaaagctcaatgattacgaagtactggtaagccgtctgatcgaccgttcc
cttcgtccattattccctgaagattatttctgcgatgtacaggtactggttaccctggta
tcttccgacaaggaagtgatgccggatgcactggcctgcctggctgcatctgccgccctc
gcagtttctgatattcccattaaagagatcatttcacaggttcgcgttgcgcgcgtggaa
ggtgagttcattgtgaacccgctccgtgcacagctcgagaaagctgatatggatttcctc
atcgcagcaactgaaaagaacctgatgatggtggaaggcgaagcagaagagtgcgctgaa
gaggacctggtgaaggccctcgagatcgctcatgaagctatccgcatccagatcaaagct
caggctgaactgcgcgacaaagccggtgttgccggaaaacgcgactataccaaaccggta
gtaaatgaagaactgcaggctaaagtgaaagctttcgccggcgatcagatctctgccatc
gcacgttctgcctccggcaagaacgagcgctccgatgcattcgatacgctgaagaaagcg
ctgatcgaaagcctcggcgaagaagtggaagatgatgtgaagaaactggccaagaaatat
ttcgaggacctgaaatgggagaacgttcgtaacgtgatcctcgatgagcgcatccgcctc
gatggccgtaagctggacgaggtccgtcagctggcaatggaagtagatgttttgccttct
ccgcacggttctgcactcttcacccgtggtgaaacacaatcgctcactaccgtaaccctg
ggtactcccctggacgaactgctggtagaaagcgctgccacttccgattacactaaattc
atccttcactataatttccctcccttctcaaccggtgaggtgaaaatgatgcgtggcccc
ggccgccgcgaagttggtcacggtaacctggccatgcgctccctgaagcagatgatgccc
ggaactgaatatccttacacagttcgcatagtgagtgatatcctggaatccaacggttcc
tcttccatggcaacagtttgcgcaggttcactggcgctgatggatgcaggtgttcctttc
cccaaacacgtaggcggtatcgccatgggattgatcacccgcgctgacaacaaatacgcg
atcctgtctgatatcctcggtgatgaagatcacctcggagatatggacttcaaagttacc
ggtacacgcgaaggtatctgcggcgtacaaatggacatcaaggtggatggtctcagcatg
gacatcatgcgcgaagcgcttgatcaggcccgcagaggacgtcttcatatcctgagcgcc
atgtacgaagcattgcctgctcaccgcgaagaggttaaacctcacgctccacgtatggag
aaactgttcatcgataaggaattcatcggtgcagtgatcggaccacaaggaaagatcatc
caggagatccagcgcgaaacgggtactaccatcaatatcgaagaagtaggcaactacggt
gaagtaagcgtattcagccctgcgaaagaaggtctggataaagctgttgcctggatcaag
ggtattgttgcagttcctgaagtaggttctgtttacgaagccactgtgaaaggtatcaag
gagttcggcgcatttgttgagttcctgcctggcaaacaaggtttgctccacatcagtgag
atttcatggaaacgtctcgaaagcatggaaggtgtattgaaagaaggcgataaagtgaaa
gtgaaactgatcggtatcgatcacaagaccggtaagttcaagctgagccgcaaagcgctc
atgcctaagccggaaggcaaacgtcctgagaataacggagcgcctgcaggagagtaa
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