Pseudobacter ginsenosidimutans: FSB84_28785
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Entry
FSB84_28785 CDS
T06126
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pgo
Pseudobacter ginsenosidimutans
Pathway
pgo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FSB84_28785
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgo03019
]
FSB84_28785
03009 Ribosome biogenesis [BR:
pgo03009
]
FSB84_28785
Enzymes [BR:
pgo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FSB84_28785
Messenger RNA biogenesis [BR:
pgo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FSB84_28785
Ribosome biogenesis [BR:
pgo03009
]
Prokaryotic type
rRNA helicases
FSB84_28785
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
SNF2-rel_dom
Cas3-like_C_2
AAA_22
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
QEC45494
LinkDB
All DBs
Position
complement(7348729..7350414)
Genome browser
AA seq
561 aa
AA seq
DB search
MTTFDALGLDARLVQATDALGYKNPTPIQEQAIPVLLSGTKDLVGLAQTGTGKTAAFGLP
LLHLVEEKQRHPQALVVCPTRELCLQIVTELEGFKKFLPQMYVAAVYGGASIGQQIRELK
RGVQIVVATPGRLIDLIERKAINLEEIKYVVLDEADEMLNMGFKDDIEFILQNTPNREAT
WLFSATMPPEIKRVSKRYMKEPFEITVGKVNTANKNIDHQYYVTSAQHRYQALKRLIDFN
PGIYGIIFTRTKADAQEIAEKLTREGYDIDALHGDLTQQQRDKVMGEFREKTLQLLIATD
VAARGIDVKDITHVINYELPDDVEVYTHRSGRTGRAGNTGICMSIVHVRETGKMRQIQSI
VQAPFHKLEIPSGKDVCRKQFYHFMDKLLQTDISHGDYETYVPMLEEKFADMTKEEVLKR
VAAMEFDRFLKYYENAEDLNVRPDARRERTLDRGQDRGRFERNGDRNARRDTRGREFGGG
GDYARLFVNLGTKDGFYKASFLQFILDMSDLRKDVLGRIDMKEMNSWIEIDKRAAQQMIR
AIDGKNYKGRRIRMNDADSRR
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgacgactttcgacgcgttgggtttagacgccaggttggtacaggctaccgatgcactt
ggctataaaaacccgacacctattcaggaacaagcgattcctgtgttgctcagcggcacc
aaagacctggtggggctggcacagaccggtacggggaaaacagccgcattcggattgcct
ttactgcaccttgtagaagagaaacagagacacccccaggcgctggtagtttgccctaca
agagaattgtgcctccagatcgttaccgaactggaaggtttcaagaaattcctgccccag
atgtatgtggccgcagtgtacggcggagcatccatcgggcaacagatcagggaactgaaa
agaggcgtgcagatagtggtggcaacacccggccgcctgattgacctgatcgaacgcaaa
gcgatcaatctcgaagagatcaaatatgtggtgctggatgaggctgatgaaatgctgaac
atgggtttcaaggatgatatcgaattcatccttcagaatacccctaaccgtgaggccacc
tggctcttcagcgctaccatgccaccggagatcaaacgtgttagcaaacgctacatgaag
gaaccattcgagatcacggtaggaaaggtgaacaccgccaacaagaatatcgatcaccag
tactatgttacctctgcacagcacaggtaccaggcgctgaaaagactgatcgatttcaac
ccgggtatctatgggatcatctttacccgtaccaaggcagacgcacaggagattgccgaa
aaacttacccgcgaaggctacgatatcgatgcactgcatggagatctgacacagcagcaa
cgcgataaggtaatgggcgaattccgtgaaaagaccttacagctcttaattgcaacggat
gtggccgcaaggggtatcgacgtaaaagatatcacgcatgtgatcaattacgagttaccg
gatgatgtggaagtgtatacgcaccgcagtggccgtacaggacgcgctggtaataccggt
atctgtatgtcgattgtgcatgtacgtgaaaccggcaagatgcgccagatccaatccatc
gttcaggcgccattccacaagctggagatccccagcggaaaggatgtttgccgcaagcag
ttctaccatttcatggacaaactgctgcagaccgatatcagccatggcgactatgaaacc
tatgttcccatgctggaagagaagttcgcagacatgaccaaggaagaagtgctgaagcgc
gtggcagccatggagttcgaccgcttcctcaaatactatgagaacgcagaagacctcaat
gttcgtccggatgcacgcagggaaagaaccttggaccgtggacaggaccgcggacgtttc
gagcgcaatggcgacaggaatgcccgccgggatacacgtggccgtgagttcggcggtggt
ggagattatgcccgcctttttgtgaacctcggcaccaaggacggcttctataaggccagt
ttcctccagttcatcctggatatgagcgatctcagaaaagatgtgctcggcaggatcgat
atgaaagaaatgaacagctggatcgagatcgataaacgtgcagcacaacaaatgatccgc
gccatcgatggcaagaactacaagggtagaaggatcagaatgaacgacgcagacagcaga
cgataa
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integrated database retrieval system
