Parabacteroides goldsteinii: K6V26_11210
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Entry
K6V26_11210 CDS
T07780
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pgol
Parabacteroides goldsteinii
Pathway
pgol03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pgol00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
K6V26_11210 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pgol03400
]
K6V26_11210 (mfd)
Enzymes [BR:
pgol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K6V26_11210 (mfd)
DNA repair and recombination proteins [BR:
pgol03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
K6V26_11210 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
UBD76845
LinkDB
All DBs
Position
2471055..2474417
Genome browser
AA seq
1120 aa
AA seq
DB search
MEVQELLKIFAAHPQVSALDTLLNGNTSNNIFLKGLNGSGAAMTIASLFLKRGGNYVCIL
NDQEEAGYFYHDLMQLTGSNEIYFFPSAYRRAIKYGHIDPANEILRTEVLSVLQDPEAPF
VIVSYPDALAEKVISRDDLKKNTLKISVGEKLDNMFVSDVLDEYGFEQVDYVYEPGQYAL
RGSILDVFSFSYEFPYRIDFFGKEVETIRTFDVETQLSKEKLESIYIVPEMNKSDRTNTL
LLDSLPAQTILAARDLAWTKERIGSLWNEEPVVGDEESFADISRMRARLVTGEDFLRAAL
NFRRIHFGTRPAGVADATLTFSTQAQPIYHKNFDMVSDSFRNYLESGYTLYILSDVEKQA
TRIRAIFEDRGENIPFTSVNKTIHEGFTDDALRICLFTDHQLFDRFHKFNLKSEKARSGK
LSLSLKELNQFTTGDYIVHIDHGVGQFGGLVRTEVNGKIQEAIKLIYQNNDIIFVSIHSL
HKLSKYKGKDSGEPPKLNKLGTGAWEKMKEKTKKKVKDIARDLILLYSQRKQETGFSYSP
DSFMQHELEASFIYEDTPDQMKATSEVKEDMESLRPMDRLICGDVGFGKTEVAIRAAFKA
VSDNKQVAVLVPTTVLAFQHFQTFSERLKDFPCRIDYISRARTTAQIKRTLMDVADGQVN
ILIGTHRIVSKDVKFKDLGLLIIDEEQKFGVSVKEKLRQMKVNVDTLTMTATPIPRTLQF
SLMGARDLSSITTPPPNRYPVQTEVERFNPDIIREAINFEMSRNGQVFFINNRIQNIYEI
ENLVRREVPDARVAVGHGQMEPEKLEKIILDFVNYEYDVLIATSIVESGIDVPNANTIII
NNAQQFGLSDLHQLRGRVGRSNRKAFCYLLSPPLSSLTQEARRRLQAIENFSELGSGIHI
AMQDLDIRGAGNMLGAEQSGFIADLGYETYQKILEEAVDELKSDEFADLYADSDNGKRDS
GSEYIRETHIESDLELMFPPTYIPNDSERVSLYRELDNMEEERDILAFTERLKDRFGKIP
KEGKELIRIVRLRRMAKKLGMEKVVLKKGQMNIILISNSESPYYQSEAFDKLLAFIQKHP
RECNLRDQNGKRSIVIKNVSTVEAACMLLEEIEKTKTSHE
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atggaggtacaagaattacttaaaatattcgccgcccacccacaagtttccgcattggat
acccttttgaacggtaatacgtcaaataacattttcctgaaagggttgaacggctcgggc
gcagcaatgacaatcgcttctctttttttaaaaagagggggcaactatgtgtgcatactc
aacgaccaggaagaagccggctacttctatcacgacctgatgcagctgaccggaagcaat
gagatttactttttcccgtccgcttaccgccgggccatcaaatacggacatatcgatccg
gcaaatgaaatactgcggaccgaagtgctcagtgtcctccaggaccccgaagcacccttc
gtgatcgtttcctatcccgatgcactggctgaaaaggtcatatcgcgcgacgacctgaaa
aagaacactctaaagatcagtgtcggcgagaagctggataatatgttcgtgtccgacgtg
ctcgacgaatatggattcgaacaggtggactatgtctacgaaccggggcaatatgccctg
cgcggcagtatcctggacgtattctctttctcctacgaatttccttaccgtatcgacttc
ttcggaaaggaagtggagacaatccgtacgttcgatgtggaaacccagctttccaaagag
aaactggagagtatctatatcgtgccggaaatgaataaaagcgaccgtaccaacaccctg
ctgctggattcactgcctgcacaaacaatcctggcagccagagacctggcatggacgaag
gaacgtatcggcagcctgtggaacgaagagccggttgtcggtgacgaagaatcgtttgcc
gacatcagccgaatgcgtgccagactggtgactggagaagatttcctccgggcagccctc
aacttccgccggatacatttcggtacacgcccggcaggagtagcggatgccacccttaca
ttcagtacacaggcacagcctatttaccataagaatttcgacatggtgagcgactctttc
cgtaactatctggagagtggctatacattatatatattgagtgacgtagaaaaacaggca
acccgtatccgggcgatcttcgaggaccggggagaaaatatccctttcacttcggtcaac
aagaccatccatgaaggatttaccgatgacgcgctgcgtatctgtctctttacggatcat
cagctgttcgatcgtttccacaagttcaatctgaaaagcgaaaaggcccgcagcggaaaa
ctctcgttgtcactgaaagaactgaaccagttcacgaccggcgactatatcgtgcatatc
gaccatggcgtcgggcagttcggcggcctggtacgcaccgaagtaaacggcaagatacag
gaagctatcaagctgatttaccagaacaacgatatcatcttcgtcagcatacattccctg
cataagctatccaaatataaaggaaaagacagcggcgaaccgcccaagctgaacaagctg
ggaaccggtgcctgggagaagatgaaggaaaagacaaagaagaaggtcaaggacattgcc
cgcgacctgatccttctctactcccaacgcaaacaggagacaggtttctcctactcgccg
gacagcttcatgcagcacgaactggaagcgagcttcatttatgaagatacgcccgaccag
atgaaagcgacaagcgaagtgaaagaagacatggaaagtttacgtccgatggatcgcctg
atctgtggtgacgtaggtttcggcaagacagaggtagcgatccgtgctgccttcaaggcc
gtttccgataacaagcaggtagccgtactggttcctacaacagttcttgctttccagcat
ttccagactttttcggagcgtctgaaagatttcccctgccggatcgattatatcagccgg
gcaaggactacggcacagatcaaaaggacgttgatggatgtcgccgacggtcaggtgaac
atcctgatcggtacgcatcgtattgtcagcaaagatgtcaagttcaaagacctgggattg
cttatcatcgatgaagagcaaaagttcggcgtatccgttaaggaaaaacttcgtcagatg
aaagtgaatgtggatacgctgacaatgacagcgacaccgatcccgcgaactttgcagttc
tcgttgatgggtgcccgcgacctgagcagcatcaccactcccccgcccaaccggtatccg
gtacagacggaagtggagcgtttcaaccccgatattatccgtgaagcgatcaatttcgag
atgagccgtaacggacaggttttctttatcaataaccgtatccagaatatttacgagata
gagaatctggttcgccgtgaagtacccgatgcccgcgtagcagtcggtcacggacaaatg
gaaccggaaaaactggagaagatcatcctcgatttcgtcaattacgaatacgatgtcttg
atcgccaccagcattgtggaaagcggtatcgacgtaccgaatgccaacacaatcatcatc
aacaacgcacagcaattcggcctgtccgacctgcaccagttacgcggacgtgtaggacga
agcaaccgcaaagccttctgttacctgctctccccgcctctttcttcattgacacaggag
gcacgccggcgtttgcaggccatcgagaacttctctgaactgggtagcggtatccatatc
gccatgcaggacctggatatccgtggtgccggtaacatgctgggagccgagcaaagcggt
ttcatcgccgacctcggctatgaaacataccagaagattctggaagaggctgtcgatgaa
ttgaaaagcgatgagtttgccgacctgtatgccgattccgacaacggcaaacgggattcc
ggcagcgaatatatccgcgaaactcatatcgaaagcgacctcgaactgatgttcccaccc
acctatatccccaacgattcggaacgtgtctctctctaccgcgaactggataatatggaa
gaagaacgggatatactggccttcacggaacgtctgaaagaccgcttcggcaaaattccg
aaggaaggaaaagaactgatccgtatcgtccgcctccgccgtatggccaagaagctggga
atggaaaaagtagtattaaagaaggggcagatgaacatcatcctcatatccaactccgaa
agcccgtactatcagagcgaggctttcgacaaattgctggcctttatacaaaaacatccc
cgcgaatgtaatctccgggaccagaacggtaagcgcagtatcgtaataaaaaatgtgagt
acagtagaggctgcctgcatgctgcttgaagaaatagagaagacaaagacttctcacgaa
taa
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