Parabacteroides goldsteinii: K6V26_28255
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Entry
K6V26_28255 CDS
T07780
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pgol
Parabacteroides goldsteinii
Pathway
pgol03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pgol00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
K6V26_28255 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pgol03021
]
K6V26_28255 (rpoB)
03400 DNA repair and recombination proteins [BR:
pgol03400
]
K6V26_28255 (rpoB)
Enzymes [BR:
pgol01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
K6V26_28255 (rpoB)
Transcription machinery [BR:
pgol03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
K6V26_28255 (rpoB)
DNA repair and recombination proteins [BR:
pgol03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
K6V26_28255 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
UBD74931
LinkDB
All DBs
Position
6898362..6902174
Genome browser
AA seq
1270 aa
AA seq
DB search
MSSTAENQRVNFASIKNQFPYPDFLEVQLKSFQDFLQLDTPPEKRKKEGLYKVFAENFPI
ADTRNNFVLEFLDYYIDPPRYCIDECIARGLTYSVPLKAKLKLYCTDPDHEDFDTVIQDV
YLGPIPYMTDRGTFVINGAERVVVSQLHRSPGVFFGQSTHANGTKLYSARIIPFKGSWIE
FATDINNVMYAYIDRKKKLPVTTLLRAIGFESDKDILEIFNLAEEVKVSKANLKKLIGRK
LAARVLKTWVEDFVDEDTGEVVSIERNDVIIDRESVLDSDSIEAILESGTQNVLLHREDQ
NLSDYAIIYNTLQKDPSNSEKEAVLYIYRQLRNAEPADEASAREVIQNLFFSEKRYDLGE
VGRYRINKKLNLTTSDDVKVLTKEDIIEIIKYLIELINSKAIVDDIDHLSNRRVRTVGEQ
LYNQFGIGLARMSRTVRERMNVRDNEVFTPIDLINAKTISSVVNSFFGTNALSQFMDQTN
PLAEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLCVYA
KINDLGFISTPYRKVVDGKVDFSEDSLQYYTAEEEEEMTIAQGNAPLDENGKFILERVKA
RFEADFPVVPPSEVDLMDVAPQQIASIAASLIPFLEHDDANRALMGSNMMRQAVPLLRTD
APIVGTGIEAQVARDSRTQIMAERAGEVVFVDATCIKIKYDRTEDEDFVSFEDAVKTYVI
PKWRKTNQSTTVDLRPICHRGQRVEAGDILTEGYSTQLGELALGRNVKVAYMPWKGYNYE
DAIVLNERMVREDFFTSVHVDEYILEVRETKRGMEELTSDIPNVSEEATKDLDERGIVRV
GARIEPGDILIGKITPKGESDPSPEEKLLRAIFGDKAGDVKDASLKATPSLRGVVIDTAL
FSKAVKKRKSRLTDKAILPKLDEEYEMKMADLKNLLVEKLLTLTNNKVSQGVKDYMNTEV
IAKGAKFGRKALEDLDYNAVQVSKWTADADKNELIKQVILNYLKKYKELDAELRRKKFDL
TIGDELPTGIVQMAKVYIAKKRKIQVGDKMAGRHGNKGIVSKIVRQEDMPFLEDGTPVDI
CLNPLGVPSRMNLGQIFEAVLGWAGRTMGVKFATPIFDGASLDDLNEMTDKAGIPRYGKS
YLYDGGTGERFDQPATVGVTYFLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRF
GEMEVWALEAFGAAHVLQEILTIKSDDVVGRSKAYEAIVKGDPMPQPGIPESLNVLLHEL
RGLGLSFTLD
NT seq
3813 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcaacagctgaaaaccaaagagttaattttgcttcgattaagaatcagtttccg
tatccggactttctcgaagttcaattgaagtcattccaagactttcttcaacttgacaca
cctcctgagaagagaaagaaggagggtttgtataaggtgtttgcagagaatttccctatt
gcagataccagaaacaactttgtgttggagttcttagattactatatcgatccgccccgt
tactgcatagatgaatgtattgcccgcggattaacctatagtgtgcctttaaaagcaaag
ttaaaactgtattgtacagacccggatcatgaggatttcgatacggttatccaggatgta
tatctgggcccgatcccttatatgactgatcgcggtacttttgtgataaatggtgctgag
cgtgttgttgtttcacagttacatcgttctccgggcgtattctttggtcagagtacacat
gccaacggaacgaaattgtattcagcacgtatcattccgtttaaaggctcatggatcgaa
tttgcaacagacattaacaatgtgatgtatgcatatatcgaccgtaaaaagaaattacct
gtaactacccttttaagagctattggttttgaaagcgataaagatattcttgaaatcttt
aacctggctgaagaagtaaaagtttcaaaagcaaacctgaagaaactgatcggtcgtaag
ctggctgcccgtgtattgaaaacctgggtggaagatttcgtagatgaagatactggcgaa
gttgtttctattgaacgtaatgacgttatcatcgaccgtgaatcggtgttggatagcgac
agtattgaagcaattctggaatctggtacacaaaatgtattgttacatcgtgaagaccag
aatctttcagattatgcaatcatctataatacgcttcagaaagaccccagtaactctgaa
aaagaggctgtattatatatttaccgtcagttgcgtaatgcagaacctgcagacgaagca
agtgcccgtgaagttatacagaacctgttcttctctgaaaaacgttatgatttaggtgaa
gtaggccgttacaggattaataaaaagttgaaccttactaccagtgatgatgttaaggtt
ttgacaaaagaagatataatcgagatcatcaagtatctgatcgaattgattaactcaaaa
gcgatcgtggatgatatcgaccatttaagtaaccgtcgtgttcgtactgtaggtgaacag
ttatacaaccagttcggtatcggtctggctcgtatgtcacgtactgtacgtgagcgtatg
aacgttcgcgacaatgaagtatttactccgatcgatttgattaacgcgaagactatctct
tctgtggttaactccttcttcggaacgaatgctttgtcgcagtttatggaccagacaaac
ccgttggctgaaattactcacaaacgtcgtctgtctgcccttggaccgggtggtttgtca
agagagcgtgccggattcgaggttcgtgacgttcactatacacactatggccgtctttgt
ccgattgaaacaccggaaggaccgaacattggtttgatctcttctctttgtgtgtatgca
aaaatcaatgacctgggatttatatctaccccatatcgtaaagttgtggatggtaaggta
gatttttcagaagattctttgcaatattatacagcggaagaggaagaagaaatgaccatt
gcacagggtaatgctccgttggatgaaaacggtaagtttattctagaaagggttaaagct
cgttttgaagcagacttccctgttgtgccgccttcagaagtagatttgatggacgttgct
ccgcagcagattgcttctatcgcagcttctttgattccgttcctggaacatgatgatgct
aaccgtgcattgatgggatctaacatgatgcgccaggcagttcctttgttgcgtacggat
gctccgatcgttggtacaggtatcgaagcacaggttgctcgcgactcccgtactcagatt
atggcagaacgtgccggtgaagttgtttttgttgatgcaacttgtatcaagattaaatat
gaccgtactgaagacgaagatttcgtaagcttcgaagatgcggttaagacctatgttatt
ccgaagtggcgtaagactaaccagagtacgactgtagaccttcgtccgatttgtcaccgt
ggccaacgtgtagaggctggtgatatcctgactgagggttattcgactcaactgggtgaa
cttgctttgggacgtaacgtgaaagtggcttacatgccttggaaaggttacaactatgag
gatgctatcgtactgaacgaacgtatggttcgtgaggacttctttacttctgttcacgtg
gatgaatatatcctagaagtgcgcgaaactaaacgtggtatggaagagcttacatccgat
atccctaatgttagtgaagaggctaccaaagatttggatgaaagaggtattgttcgtgtg
ggtgcccgtatcgaaccgggtgacattctgatcggtaagattactccgaagggcgaatcg
gatccttctcctgaagaaaaattgctgcgtgcaatcttcggtgataaggctggtgatgtg
aaagatgcttctttgaaagcgactccgtctcttcgtggtgttgttatcgatacggcttta
ttctctaaagctgttaagaaacgtaagtctagattgacagataaggctattcttccgaag
ttggatgaagaatacgaaatgaagatggccgacctgaagaacttactggtagaaaagtta
ttgacgcttactaacaataaagtttctcagggtgttaaagactacatgaatactgaagtg
attgcgaagggcgctaagtttggtcgcaaggctttggaagatctggattacaatgctgtt
caggttagtaaatggactgccgatgctgataagaacgaacttatcaagcaggtgatcctg
aactatctgaagaaatataaagaactggatgccgaactgagacgtaagaaattcgacctt
actatcggtgatgaactgccgacaggtatcgttcagatggcaaaggtttacattgctaag
aaacgtaagattcaggtaggtgataagatggccggtcgccacggtaacaaaggtattgtt
tccaagatcgttcgtcaggaagatatgccgttcctggaagacggaactccggttgatatc
tgcttgaacccgctgggtgtgccttcccgtatgaacctgggacagatttttgaagcagta
ttaggttgggccggtagaacgatgggagtgaagtttgctactccgattttcgacggtgca
tcactggatgacctgaacgagatgactgacaaagctggtattcctcggtatggtaaatct
tacctgtacgatggtggaaccggtgagcgtttcgaccagccggcaaccgtaggtgttacg
tacttcctgaaactgggtcacatggttgatgataagatgcacgcccgttcaatcggtccg
tactctttgattactcaacagcctctgggtggtaaagctcagtttggtggtcagcgtttc
ggagaaatggaagtttgggcactggaagccttcggtgccgcacatgttcttcaggaaatt
cttacaattaagtctgacgacgttgtaggacgttctaaagcttacgaagcaattgtgaag
ggtgatccgatgccacaaccgggtattccggaatctctgaatgtattgctccatgagctg
agaggtttaggtttaagctttactctggattaa
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