Paraburkholderia graminis: CUJ91_01930
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Entry
CUJ91_01930 CDS
T05548
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
pgp
Paraburkholderia graminis
Pathway
pgp02020
Two-component system
pgp02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pgp00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
CUJ91_01930
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CUJ91_01930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pgp03021
]
CUJ91_01930
Transcription machinery [BR:
pgp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CUJ91_01930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
HTH_38
HTH_23
HTH_Crp_2
Motif
Other DBs
NCBI-ProteinID:
AXF06793
LinkDB
All DBs
Position
PHS1_A:complement(425730..427241)
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AA seq
503 aa
AA seq
DB search
MKASLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVATAISQNPLLENEDDWIASPLRV
ASDGSLITQAPSSSAPPEQMGGNGSSSSSSERSENGEPQGVDEYNGLSGDGNGDASQWNL
DDYGRSGNASDDDDLPPLQIHESSTSLRDHLMAQLRVTQAGQRDRALVTFLIESLDDDGY
LAATLEEVLADLPEELEVDLDEMNAALALLHSFDPAGVGARSASECLKLQLLRLEPSPTR
ALALDIVSHYLELLAARDFTRLRKHLKANDDDLRDAHMLIRSLEPFPGAAYGKAEADYVV
PDIMVRKTAQGWQAELNPEVVPKLRINHLYANILRNNRGDPGSGSLRQQLQEARWLIKNI
QQRFETILRVAQAIVERQKSFFVHGEIAMRPLVLREIADTLGLHESTVSRVTTGKYMLTP
FGTLEFKYFFGSHVSTDTGGAASSTAIRALIKQLIGAENAKTPLSDSRIAELLAEQGFVV
ARRTVAKYREALRIPAVNLRKSL
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atgaaagccagcctccaactccgcctatcgcagcatcttgcgttgaccccgcaactgcag
cagtccatccggctgcttcagctgtccacgctcgaactgcagcaggaagtggcaacggcg
atctcgcagaatccgctcctcgagaacgaggacgactggatcgcgagcccgctgcgcgtg
gcgtccgacggctctctgatcacgcaggcgcccagttcgtccgcgccgcccgagcagatg
ggcggcaatggctcgtcgtcgagcagcagtgagcgctcggagaacggcgagccgcaaggc
gtggacgaatacaacggcctctcgggcgacggcaacggcgacgcgtcgcaatggaatctc
gacgactacggccgctccggcaacgcctccgacgacgacgatttgccgccgctgcaaatt
cacgaatcgagtacttcgctgcgcgatcacctgatggcgcaactgcgcgtcacgcaggcc
ggtcagcgcgaccgcgcgctcgtcaccttcctgatcgagtcgctcgacgacgacggctat
cttgccgccacgcttgaagaagtgctcgccgacttgcccgaagaactcgaagtcgacctg
gacgaaatgaatgcggcgctcgcgctgctgcacagtttcgaccccgcgggcgtcggcgcg
cgttccgcgtccgaatgcctgaagctgcaattgttgcggctcgaaccctcgcctacgcgg
gcgcttgcgctcgacatcgtcagccattatctggaactgcttgcggcgcgcgatttcacg
cgtctgcgcaagcatctgaaggcaaacgacgacgatctgcgcgacgcgcacatgctgatc
cgctcgctcgaaccgtttcccggcgcagcgtatggcaaggccgaagcggattacgtggtg
ccggacatcatggtgcgcaaaaccgcccagggctggcaggccgaactcaatcccgaggtc
gtgccgaagctgcgcatcaaccacctgtacgccaacattttgcgcaataaccggggcgat
ccgggcagcggttcgttgcgccagcaactgcaggaagcgcgctggctgatcaagaatatc
cagcagcgtttcgagacgatcctgcgggtcgcgcaagccattgtcgagcgtcaaaagagc
ttttttgtgcacggcgaaattgccatgcgccccttggttttgcgggaaattgctgatacg
ctgggcctacacgagtcgactgtctcgcgtgtgacaaccggtaagtacatgctcaccccg
ttcgggacgctcgagttcaaatacttcttcggttcgcatgtttcgacagatacgggcggc
gcggcgtcttcgaccgccattcgcgcgctcatcaagcaactgataggagcggaaaacgca
aaaacgcctctctcagacagccgcatagccgaactgctggcggaacagggcttcgtggtc
gcacggcgcaccgtggcgaaatatcgcgaagcgctcagaatcccggcagtcaacctgcgc
aagtctctgtag
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