Paraburkholderia graminis: CUJ91_08170
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Entry
CUJ91_08170 CDS
T05548
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
pgp
Paraburkholderia graminis
Brite
KEGG Orthology (KO) [BR:
pgp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pgp03009
]
CUJ91_08170
Enzymes [BR:
pgp01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
CUJ91_08170
Ribosome biogenesis [BR:
pgp03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
CUJ91_08170
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
Methyltransf_ANTKMT
TRM5-TYW2_MTfase
TRAM
Methyltransf_23
Methyltransf_15
Cons_hypoth95
MTS
RrnaAD
Methyltrans_SAM
Methyltransf_11
Motif
Other DBs
NCBI-ProteinID:
AXF07906
LinkDB
All DBs
Position
PHS1_A:1826017..1827444
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AA seq
475 aa
AA seq
DB search
MSRTAHHRRSPKRPSKYHKAAPAPAPVITGNEPVVEIVSLDMEARGVGRIESEDGTPGKV
IFVEGALPGERVSYSTHRSKPKFEQAEVVQVFRESVMRTKPKCTYFDICGGCSMQHLDIR
AQVAVKQRVLEDNLQHLAKLRPETVFRPIHGPAWDYRYRARLAVRFLPEKGGMRIGFHEK
KSSYIADMKTCEVLPPHVSAMLMPLRFMVRKLSIYDRMPQLELAVGSSVTAFVVRNLEPL
TAADEQVLREFADEHKVQFWIQPGGPDTVTPLYPLDVQLDYTLPEYNIRMPFKPTDFTQV
NHAINRVLVSRALRLLAPARTDRVLDLFCGIGNFTLPLARIAREVVGIEGSDVLTSRALA
NAELNGVAAHTSFACRNLFEVTADDMRALGHFDKFLVDPPREGALAVAKALAEIAQSGDG
PLPKRIVYVSCNPSTLARDAGLLVHEAGYRLVGAGVVNMFPHTSHVESIALFERD
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
gtgtcccgaactgcccaccatcgtcgctcgccgaagcgcccgtcgaaataccacaaagcc
gcgccggctccggcgcccgtcattaccggcaacgagccggtcgtcgaaatcgtttcgctc
gatatggaagcgcgcggcgtcggccgcatcgagtccgaagacggcacacccggcaaggtg
attttcgtcgaaggcgcgctgcccggcgagcgcgtgagctactcgacacatcgcagcaag
ccgaagttcgaacaggccgaagtggtgcaggtgttccgcgaaagcgtgatgcgcacgaag
ccgaaatgcacgtatttcgacatttgcggcggctgttcgatgcagcatctcgacattcgc
gcgcaggtcgcggtgaagcagcgcgtgctcgaggacaaccttcagcatctcgcgaagctg
cgccccgaaacggtgttccggccgattcacggaccggcctgggattatcgctatcgcgcg
cgtctcgccgtgcgttttctgcccgaaaaaggcggcatgcgcattggctttcacgagaag
aagagcagctacatcgcggatatgaaaacctgcgaagtgctgccgccgcatgtgtcggcg
atgctgatgccgctgcgcttcatggtgcgcaagctgtccatctacgaccgcatgccgcag
ctcgaactggcggtcggctcgtcggtcacggcgtttgtcgtgcgcaatctcgagcctttg
actgccgccgacgaacaagtgctgcgcgagttcgccgatgagcacaaggtgcagttctgg
attcagccaggcggcccggacacggtcacgccgctgtatccgctcgacgtgcagctcgac
tacacgctgcccgagtacaacatccgcatgccgttcaagccgaccgacttcacgcaggtc
aatcacgcgatcaaccgtgtgctcgtgagccgcgcgctgcgcctgctcgcgcccgcgcgc
acggaccgcgtgctggatctgttctgcggcatcggcaatttcacgctgccgctcgcgcgc
atcgcgagggaagtggtgggcatcgaaggcagcgacgtgctgacctcgcgcgcgctggcc
aatgccgagctgaacggcgtggcggcgcacacgtcgtttgcatgccgcaatcttttcgaa
gtcaccgccgacgacatgcgcgcgctcggccacttcgacaagtttctggtcgacccgccg
cgcgaaggcgcactggccgtcgcgaaggcgctggcggaaatcgcgcaaagcggcgatgga
ccgctgccgaagcgcatcgtctacgtgtcgtgcaatccgtcgacgcttgcgcgcgacgcc
ggtctgctcgtgcacgaggcgggctaccggctggtgggtgcgggcgtcgtcaacatgttc
ccgcatacgtcgcatgtcgagtcgattgcgttgttcgagcgggactga
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