Paraburkholderia graminis: CUJ91_11805
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Entry
CUJ91_11805 CDS
T05548
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pgp
Paraburkholderia graminis
Brite
KEGG Orthology (KO) [BR:
pgp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgp03019
]
CUJ91_11805 (hrpA)
Enzymes [BR:
pgp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CUJ91_11805 (hrpA)
Messenger RNA biogenesis [BR:
pgp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CUJ91_11805 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
WHD_HA2
HA2_C
DEAD
AAA_22
AAA_19
T2SSE
nSTAND3
NACHT
AAA_30
nSTAND_NTPase5
AAA_23
PhoH
acVLRF1
TsaE
Myosin_head
Motif
Other DBs
NCBI-ProteinID:
AXF08530
LinkDB
All DBs
Position
PHS1_A:complement(2671903..2676270)
Genome browser
AA seq
1455 aa
AA seq
DB search
MSNVPKSPAAANENAAPAADQTKAGDAKRRADQDANRGKPDVPRKAREPRSAVSGAEASA
KEKSRAEQAEHAESRGSRGSGEAGEPREAREPRAPRQPQESRGPRPPREPQQQRAPRQPQ
EARPPRPPREPRVVQPNPIPPITFPEALPVSARRDEIAKAIAENQVVIVSGETGSGKTTQ
LPKICLALGRGLGAGGAGLIGHTQPRRIAASATGRRIAEELGTPFGEVVGYKVRFTDNLS
PGASVKLMTDGILLAETQTDPLLKAYDTLIIDEAHERSLNIDFLLGYLKEILAKRADLKL
IVTSATIDADRFARHFGSEEKPAPVIEVSGRLYPVEVRYRPVAEESPAIKAAQGTSGSSG
TSGASRGDRPKSPRESGKERDRDLMEAIVDAVDELCREGPGDVLVFLPGEREIRDAAEAL
RKHHPPHTEILPLFARLSAAEQERVFRTSNARRIVLATNVAETSLTVPGIRYVVDTGLAR
VKRYSYRNKVEQLQVEAISQAAANQRAGRCGRVADGICIRLYDESDYQSRVRFTDPEILR
SSLASVILRMKSLHLTAIETFPFIEPPPGRAIADGYQLLNELGAVDDDNQLTPLGRELAR
LPLDPRVGRMILAARDQQSLKEVLIIASALSVQDPRDRPIEAQEQADQAHRRFADERSEF
LQWLKIWNWFDEAIAHKKSNKQLHEECRKNFLSQLRLREWRDVHSQLLTVVREHGWRLNE
AEATFEQIHLALLTGLLGNIGLKADDEPYYLGARGIKFYLWPGSALVKKAGKWVMAAELV
ETSRLYARCIARIEPEWIEKIGAHLLKKSLSEPHWEKRAAQVSAFERAVLYGLPIYHRRR
VSFGKQDPARARELFIRGALVEGEFDTKLGFFAHNRKLLADIEQLEHKSRRQDVLVDDEL
IFAFYDQALPKGIYTGAAFERWYRDEVKKSGQAEDKLRLLYLSRDDLMRHEAAGVTTDLF
PKRMTMSGVDMALSYHFEPGSPRDGVTLAVPLFALNQVDARRCEWLVPGMLKEKTHLLLK
SLPQKLRRHCVPLPEYAAGFVDRHAAPRFAAGGLLEALIADVREQKQVALKQADFKLETL
PPHLFMNFKVIDEHGRQLAMGRNLSQLRAELGGQAQQHFQKIASSAAGAALADAAGTRGQ
AAAPAPAGAASRSKGAAPPGPQTATQGAGGTALYENLTTWNFGKLPELLEIRRGGQTLFG
YPALVDRGTHCDVEVFDSPDEAARIHRAGLRRLFALQLKEPIKYLEKNLPGLREMAMQFM
TRGTQEELRDQLIDTALDRACLQDPLPDDDVSFHTRRDEGRSRLTLLAQEIARLVGQILG
EYASVLKKLVQAKSFTAAYADIQHQLDALIGKRFVVDTPYSQLTHFPRYLKGIALRIDKL
KADPARDARQFAEFQPLLQNYQRAVAQRGGVLDARLAEFRWLLEELRVSLFAQELRTPMP
VSVKRLYKVWDSMQR
NT seq
4368 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaatgtacccaaaagtcccgccgcggcgaacgagaatgcggcgccggccgccgat
caaacgaaggccggcgacgccaagcgccgcgccgaccaggacgcgaaccgcggcaagccg
gacgtgccccgcaaggcgcgcgagccgcgtagtgccgtgtctggcgctgaggcgtccgcg
aaggaaaaaagtcgcgccgagcaagcggagcatgctgagtctcgcggatcgcgagggtct
ggcgaagcaggcgagccgcgtgaagcacgtgaaccgcgtgcgccacgccagccgcaagaa
tcgcgtgggccgcgtccgccacgtgagccgcagcagcagcgcgcgccacgtcagccgcag
gaagcccgtccgccgcggccgccacgcgagccgcgtgttgtccagccgaacccgattccg
ccgatcaccttccccgaagcgctgccggtatccgcccgccgcgatgaaatcgcgaaggcc
atcgccgaaaaccaggtggtgatcgtgtccggcgagaccgggtcgggcaagaccacgcag
ttgccgaaaatctgcctcgcgctcgggcgcggtctcggcgcgggcggcgccggcctgatc
ggccacacgcagccgcgccgcatcgccgcttcggcgacgggccggcgcatcgccgaggaa
ctcggcacgccgttcggcgaagtggtcggctacaaggtgcgcttcaccgacaatctgtcg
ccgggtgcatccgtcaagctgatgacggacggcattctgctcgccgagacgcagaccgat
ccgctgctgaaggcgtacgacacgctgatcatcgacgaggcgcatgagcgcagcctgaac
atcgatttcctgctcggctacctgaaggaaatcctggcgaagcgtgccgatctgaagctg
atcgtgacgtcggcgacgatcgacgccgaccgctttgcgcgccacttcggcagcgaagag
aaacccgcgccggtgatcgaagtgagcgggcggctgtatccggtcgaagtgcgctaccgt
ccggtcgcggaagaaagcccggcgatcaaggcggcgcagggcacgtcgggctcgtcgggt
acgtctggcgcgtcgcgcggcgaccggccgaaaagcccgcgcgaatccggcaaggagcgc
gaccgcgatctgatggaagcgatcgtcgacgccgtcgacgaactgtgccgcgaaggcccc
ggcgacgtgctcgtcttcctgccgggcgagcgcgaaattcgcgacgccgccgaggcgctg
cgcaagcaccatccgccgcatacggaaatcctgccgctgttcgcgcgcctttccgccgcc
gagcaggagcgcgtgttccgcacctcgaacgcgcgccgcatcgtgctcgcgacgaacgtc
gcggaaacctcgctgacggtgccgggcattcgctacgtggtcgacacgggcctcgcgcgc
gtgaagcgttattcgtatcggaacaaggtcgagcagttgcaggtcgaggcgatctcgcag
gccgccgcgaatcagcgggcggggcgttgcgggcgggtggccgacggcatctgcattcgt
ctttacgacgagagcgattatcagagccgcgtgcgctttaccgatccggagattttgcgc
tcgtcgctggcgtcggtgattctgcgcatgaagtcgctgcatctgaccgcgatcgagacg
tttccgtttatcgaaccgccgcctggccgcgcgatcgccgacggctatcaactgctgaac
gaactcggcgccgtcgacgacgacaatcagctcacgccgctcggccgcgaactcgcgcgt
ctgccgctggacccgcgcgtcggccggatgattctcgccgcgcgcgatcagcagtcgctc
aaggaagtgctgatcattgcgagcgcgttgtcggtgcaggacccgcgcgaccgtccgatc
gaggcgcaggagcaggccgaccaggcgcatcgccgttttgccgacgagcgctcggaattc
ctgcagtggctgaaaatctggaactggttcgacgaagccatcgcgcacaagaagtcgaac
aagcagttgcacgaggaatgccggaagaactttctgtcgcaattgcgtctgcgggaatgg
cgcgacgtgcattcgcaattgctgacggtcgtgcgcgaacacggctggcgtctgaacgaa
gccgaggcgacgttcgagcagatccatcttgcgctgttgacgggtctgctcggcaacatc
ggtctgaaagccgacgacgagccgtattacctcggcgcgcgcggcatcaagttttatctg
tggccgggctcggcgctcgtgaagaaggcgggcaagtgggtgatggccgcggaactggtc
gagacgagccgtctgtacgcgcgctgcatcgcgaggatcgagcctgagtggatcgagaaa
atcggcgcgcatctgctgaagaaatcgctgtccgagccgcattgggagaagcgcgcggcg
caggtgtcggcgttcgagcgcgcggttttgtatgggctgccgatctatcaccggcgccgc
gtgagcttcggcaagcaggacccggcgcgggcgcgcgagctgtttatccgcggcgcgctt
gtcgaaggcgaattcgacacgaagctcggatttttcgcgcacaaccgtaagctgctcgcc
gacatcgaacaactggaacacaagtcgcgtcgccaggacgtgctcgtcgacgatgagctg
attttcgcgttctacgatcaggcgctgccgaagggcatttacaccggcgcggcgttcgag
cgctggtatcgcgacgaggtgaaaaagagcggccaggcggaggacaaactgcgcctgctg
tatctgtcgcgcgacgatctgatgcgccacgaagccgcgggcgtgacgaccgatctgttc
ccgaaacggatgacgatgtcgggcgtcgacatggcgctcagctatcacttcgagccgggt
tcgccgcgcgacggcgtcacgctcgccgtgccgcttttcgcgctgaatcaggtcgacgcg
cggcgctgcgagtggctcgtgcccggcatgctgaaggagaagacgcatcttctgctgaag
tcattgccgcagaagttgcggcgccactgcgtgccgctgccggaatacgcggccggtttc
gtcgaccggcatgccgcgccgcgttttgccgcaggcggcttgctcgaagcgctgatcgcc
gatgtacgcgagcaaaagcaggtcgcgctgaagcaggcggatttcaagctcgaaaccttg
ccgccgcatctgttcatgaacttcaaggttatcgacgaacacgggcggcaactcgcgatg
ggccgcaacctgtcgcagttgcgcgcggaactcggcgggcaggcgcagcagcatttccag
aagattgcgtcgagtgcggcgggcgcagcgctcgcagacgctgcgggcacgcgcggccag
gcggcggcacctgcaccggccggtgcggcgtcgcgcagcaagggcgcagcgccgccgggg
ccgcagactgcgacgcaaggcgccggcggcaccgcgttgtacgaaaacctgacgacgtgg
aatttcggcaagctgcccgagttgctcgaaattcgccgcggcggacagacgcttttcggt
tatccggctttagtggatcgcggcacgcattgtgatgtcgaagtgttcgattcccccgat
gaggcggcgcggattcatcgcgcgggtctgcgtcggctattcgctttgcagttgaaggaa
ccgatcaagtatctcgagaaaaatctgccgggcttgcgcgaaatggcgatgcagttcatg
acgcgcggcacgcaggaagagttgcgcgatcagttgatcgacaccgcgctcgatcgtgcg
tgcctgcaagatccgttgccggacgacgacgtcagcttccatacgcgccgcgatgaaggg
cgcagccggctcacgttgctggctcaggagattgcgcggctggtcgggcagattctcggc
gaatacgcgagcgtgctgaaaaagctcgtgcaggcgaagtcgttcacggcggcgtacgcc
gatatccagcatcaactggacgcgctaatcggcaagcggttcgtggtggatacgccgtat
tcgcaactgacgcatttcccgcgctatctgaagggtattgcgctgcggatcgacaagctg
aaagcggaccccgcgcgcgatgcacggcagttcgccgaattccaaccgttgttgcagaac
tatcagcgcgcggtcgcgcagcgcggcggcgtgctggatgcgcgtcttgccgaattccgc
tggctgctggaggaattgcgcgtttcgctgttcgcgcaggagttgcgcacgccgatgcct
gtgtcggtcaagcggctttataaggtttgggattcgatgcagcggtga
DBGET
integrated database retrieval system
