Paraburkholderia graminis: CUJ91_16630
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Entry
CUJ91_16630 CDS
T05548
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pgp
Paraburkholderia graminis
Pathway
pgp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CUJ91_16630 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgp03019
]
CUJ91_16630 (recQ)
03400 DNA repair and recombination proteins [BR:
pgp03400
]
CUJ91_16630 (recQ)
Enzymes [BR:
pgp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CUJ91_16630 (recQ)
Messenger RNA biogenesis [BR:
pgp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CUJ91_16630 (recQ)
DNA repair and recombination proteins [BR:
pgp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CUJ91_16630 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
RecQ_Zn_bind
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
AXF09940
LinkDB
All DBs
Position
PHS1_A:complement(3698074..3699921)
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AA seq
615 aa
AA seq
DB search
MSRPLEILNEVFGYPAFRGQQGEIVEHVAGGGDCLVLMPTGGGKSLCYQIPSLVRREGGF
GTGIVVSPLIALMQDQVAALTEVGVRAAYLNSTLSSAEAMATERALRDGEIDLLYVAPER
LMTPRFQELLERTRIGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFPNVPRIALTATAD
AITRDEIIHRLALDDARIFVSSFDRPNIRYRIVEKDNARTQLLDFIRAEHTRADGTTDAG
VVYCLSRRKVEETAEWLKEKGMRALPYHAGMEFETRQKHQEMFQREEGIVMCATIAFGMG
IDKPDVRFVAHLDLPKSVEGYYQETGRAGRDGMPANAWMAYGLGDVVQQRKMIDESDADD
AHKRVQTGKLDALLGLCEAATCRRVRLLAYFGESSKPCGNCDNCLEPPATWDATREAQMA
LSCVFRAQRASGFHFGAGHLIDILRGNRSEKIVQRGHEKLTTFGIGAALGEPEWRAVFRQ
LVAFGYLTVDHEGFGSLVLTEASKPVLKGEQNVTMRRYVKPTRTRQSSGRTSERADPTIG
MGPRERARWERLRTWRTETAKSDGVPAYVIFHDATLAEIARNGPDSIEDLRGIPGMGARK
LDRFGDELLEVVAAD
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgtccgctcgaaatcctcaacgaagtttttggttaccccgcgttcagaggacag
caaggcgaaattgtcgagcacgtcgccggcggcggtgactgtctcgtgctgatgccaacg
ggcggcggcaaatcgctgtgctatcagattccgtcgctggtgcgccgcgaaggcggcttc
ggcacgggcatcgtggtgtcgccactgatcgcgctgatgcaggaccaggtggctgcgctc
accgaagtcggtgtgcgcgcggcgtacctgaactcgacgctctccagcgccgaggcgatg
gctaccgaacgcgcgctgcgcgacggcgagatcgacttgctttacgtggcgcccgagcgc
ctgatgacgccgcgattccaggaactgctggaacgcacgcgcatcggacttttcgcgatc
gacgaagcgcattgcgtgtcgcaatgggggcacgacttccggccggaatacattcagctt
tccgtgctgcacgagcgtttcccgaacgtaccgcgcattgcgctgacggcgaccgcggac
gccatcacgcgcgacgaaatcattcatcgtctcgcgctcgacgacgctcgcattttcgtc
tcgagcttcgatcggccgaacattcgttatcggatcgtcgaaaaagacaacgcgcgcacg
cagttgctcgactttatccgcgcggaacacacgcgagccgacggcacgaccgacgctggc
gtcgtctattgtctgtcgcggcgcaaggtcgaagagacggccgagtggctcaaggaaaag
ggcatgcgcgcgctgccgtatcacgccggcatggaattcgaaacgcgccagaagcatcag
gaaatgttccagcgcgaggaaggcattgtgatgtgcgcgacgatcgcgttcggtatgggc
atcgacaagccggacgtgcggttcgtcgctcacctcgatttgccgaagagcgtcgaaggg
tattaccaggaaaccggccgcgcgggccgcgacggcatgccggccaatgcgtggatggcc
tacggcctcggcgacgtcgtgcagcagcgcaagatgatcgacgaatcggacgccgacgac
gcgcataagcgcgtccagaccggcaagctcgatgcgctgctcggcctgtgcgaggctgcg
acctgccggcgcgtgcggcttctggcgtacttcggcgaatcgagcaagccttgcggtaac
tgcgacaactgcctcgagccgcccgccacatgggacgcgacgcgcgaggcgcaaatggcg
ctgtcgtgcgtgttccgggcgcagcgggcgagcggttttcacttcggcgccggccatctg
atagatattctgcgcggcaaccggagcgaaaaaatcgttcagcgcggtcatgagaagctg
accacgttcggcattggcgcggcgctcggcgagccggagtggcgcgcggtgtttcgacag
ctcgtggcgttcggctatctgacggtcgaccatgagggcttcggctcgcttgtcctgacc
gaggcgagcaagcccgttctgaaaggcgaacagaacgtgacgatgcgccgctatgtgaag
ccgacgcgcacgcgtcagtcgtccggacgaaccagcgagcgggcggacccgaccatcgga
atggggccgcgcgagcgggcgcgctgggagcgtttgcgcacctggcgcacggaaaccgcg
aagagcgacggcgtgcccgcctacgtgattttccacgacgcgacactcgcggagatcgcg
cgcaacggcccagactcgatcgaggacttgcgaggcattccaggcatgggcgcgcgcaag
ctcgaccgtttcggggacgaactgctcgaagtcgtcgccgcggactaa
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