Paraburkholderia graminis: CUJ91_20245
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Entry
CUJ91_20245 CDS
T05548
Name
(GenBank) recombinase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pgp
Paraburkholderia graminis
Pathway
pgp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CUJ91_20245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgp03019
]
CUJ91_20245
03400 DNA repair and recombination proteins [BR:
pgp03400
]
CUJ91_20245
Enzymes [BR:
pgp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CUJ91_20245
Messenger RNA biogenesis [BR:
pgp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CUJ91_20245
DNA repair and recombination proteins [BR:
pgp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CUJ91_20245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
Cas3-like_C_2
AAA_30
Phage_Gene47
LSDAT_prok
Motif
Other DBs
NCBI-ProteinID:
AXF10317
LinkDB
All DBs
Position
PHS1_B:464367..466127
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AA seq
586 aa
AA seq
DB search
MTVDQRLRSMRKTMRDMFGIARLRTGQEDIIRSVLQHRDTLATMPTGAGKSLCYQLPALH
LEGTTLVVSPLIALMKDQADKLLAAGIDCTLVNSTLKSRAEREALQRIAAGDSGIVFVTP
ERLAQPAFIETLRARPENRVGLVVVDEAHCVSHWGHDFRPAFLEIAAAVKALGQPPVLAL
TATATQRVIDDIVHSLALRDPLVVRTGTYRENLRYRVVQVSTAGGKDGAARAMAAKREQL
SKLIGSLGGAGIVYAATVRDVDRIYGWLTEAGESVSRYHGRMSAAAREEAQEQFMSGATR
LMIATNAFGMGIDKADIRFVIHYQIPGSLDAYYQETGRAGRDGEPADCVLLFDLNDKRIQ
QFFLAGRYPSVELAQRVYDTLAAPIGEEPKGVTLKALKDALPDVGAGKLEVALNMLVDAR
VAGRDRQRRYRLRTHEDARESARESTRDTIAKAAAQFEQMSAHDRETLQAMIDYAQTGQC
RWRAILDYYGDTPAVERCGVCDNCVRPPQIDVAPDAIVAGATSADKEAPRKRSDPVKPRV
WAPGDAVRVPRYGAGEVALASGEQVAVQFPDGSTRTFLASYVRAGR
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atgacagtcgaccaacggcttcgcagcatgcgcaagaccatgcgcgacatgttcggcatc
gcgcgtttgcgcacggggcaggaggacatcatccgcagcgtattgcaacatcgcgacacg
cttgcgacgatgcccaccggcgcgggcaaatcgttgtgctaccagttacccgcgctgcat
cttgaaggcacgacgctcgtcgtgtcgccgctgatcgcgttgatgaaggaccaggcggac
aagctgctcgcggccggcatcgactgcacgctggtgaacagcacgttgaaaagccgcgcc
gagcgcgaggcgctgcaacgcattgcagcgggtgacagcggcattgtgttcgtgacgccc
gagcgtctcgcgcagccggcgttcatcgagacgttgcgcgcgcgcccggaaaatcgcgtc
ggcctcgtggtcgtcgacgaggcgcattgcgtgtcgcattggggacacgatttccgtccc
gcgtttctggagatcgccgcggcggtgaaggcgctcgggcaaccgcccgtgctcgcgttg
accgcaacggcgacgcagcgcgtgatcgacgacatcgtgcattcgctcgcgctgcgcgac
ccgcttgtggttcgcacgggcacgtatcgcgagaatttgcgttatcgggttgtgcaggtg
agcacggcgggcggcaaggacggcgccgcacgcgcgatggccgcgaagcgcgagcaactg
tcgaagctgatcggatcgctcggcggcgccggcatcgtgtatgcggccaccgtgcgcgac
gtcgaccgcatttacggctggctgacggaagccggcgaatcggtgtcgcgctatcacggc
cgaatgtcggcggccgcgcgcgaagaagcgcaggagcagttcatgtcgggcgcgacccgc
ttgatgatcgcgacgaacgcgttcggcatgggcatcgacaaagcggacatacgcttcgtg
attcattaccagatacctggcagcctcgatgcctactatcaggagacaggccgcgcgggc
cgcgatggagagcctgccgattgcgtgctgctattcgacctgaacgacaagcgcatccag
cagttctttcttgcgggacgctacccgagcgtcgaactggcgcaacgcgtgtatgacacg
ctggcggcgcctatcggcgaagaaccgaagggtgtgacgctcaaggcgctgaaggatgcg
ttgcccgatgtcggcgcaggcaagctcgaagtcgcgctgaacatgctggtcgacgcgcgc
gtggcgggccgcgaccggcagcgccgttatcgtctgcgaacgcatgaggatgcgcgcgaa
tcggcccgtgaatccacgcgggacaccatcgcgaaagccgcggcgcaattcgagcagatg
agcgcgcatgacagggaaacgctgcaggcaatgatcgactatgcgcaaaccggccagtgc
cgctggcgcgcaatcctcgactattacggcgatacgcccgccgtcgagcgctgcggcgtg
tgcgataactgcgtgcgtccgccgcaaatcgacgtcgcaccggatgcgatcgttgcaggc
gcaacgtcagcggacaaggaagcgccgcgtaagagaagcgacccagtcaaaccgcgcgtc
tgggcgccgggcgatgcagtacgcgtgccgcgttacggcgcaggcgaggtcgcgctcgcg
agcggcgaacaggtggccgtgcaattccccgacggcagcacgcgcacctttctcgcgagc
tatgtgagggccggacgctga
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