Paraburkholderia graminis: CUJ91_31075
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Entry
CUJ91_31075 CDS
T05548
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pgp
Paraburkholderia graminis
Pathway
pgp02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pgp00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CUJ91_31075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pgp03021
]
CUJ91_31075
Transcription machinery [BR:
pgp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CUJ91_31075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
AXF12233
LinkDB
All DBs
Position
PHS1_B:2901812..2904235
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AA seq
807 aa
AA seq
DB search
MAKTTGGKSKTGPRSTEQTAKVASAKLVSSTRKVSAASVTPAARRKSSTTSPAQAEPAGK
AKGVATAVTKTAQAVPPPAARRPGVRSAREAAVAQDDAAVRETPVSTVQPAVVHQPRVET
TAGTANSMTKKLNEVPVDDDATQSEETPVAAPGKVEKAKARDRRAKEKALLKDAFSSSQP
GTVEELEERRSKLRALIKLGKERGFLTYAEINDHLPDNFTETEAIEGIISTFNDMGVAVY
EQAPDAETLLLNDNAPAASSDDEVEEEAEVALSTVDSEFGRTTDPVRMYMREMGTVELLT
REGEIEIAKRIEDGLKHMVMAISACPTTIADILAMAERVANEEIRIDELVDGLIDADAED
ADGFSVQEAEAIESEEEEEEEEDEEDEEEDDGTAQATANAAQMEALKRASLEKFALISEW
FDKMRRAFEKEGYKSKSYLKAQETIQNELMTIRFTARTVERLCDTLRAQVDEVRQVERQI
LHTVVDKCGMPRAEFIARFPGSETDLEWADKIVSEGHPYSAILTRNIPAIREQQQRLLDL
QARVVLPLKDLKETNRQMAAGELKARQAKREMTEANLRLVISIAKKYTNRGLQFLDLIQE
GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRIS
RQILQETGLEPDPATLAEKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDTN
TVAPADAALHASMRDVVKDVLDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERI
RQIEAKALRKLRHPSRSDKLKSFLEGN
NT seq
2424 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagactacaggtggaaagagcaaaacaggcccacgctccacggagcagaccgca
aaggtcgcctcggccaagttggtttcttctacccggaaggtgtctgctgccagcgtgaca
ccggctgccaggagaaaatcatcgaccacttcgcccgcgcaagcggagccggcaggcaag
gcaaaaggagtggcaacggcggtcacgaagacggcgcaagccgtaccgcctccggctgcg
aggcggccgggtgtcagaagcgcaagggaagcggctgtcgcgcaggacgatgcggcagtg
cgcgagactccagtatccacggttcaaccggctgttgtccaccagccgcgagtcgagact
acagccggtacggcgaactccatgacgaaaaagctgaatgaagtacccgtcgatgacgac
gcaacccaaagcgaagaaacccctgtggccgctcccggcaaagtggaaaaggccaaggct
cgcgaccgccgtgcgaaagaaaaggcgctgctgaaagacgcgttttcgtcgtcgcagccc
ggcacggtcgaggaactggaagagcgtcgttcgaaactccgcgcgctgatcaagctcggc
aaggagcgcggcttcctcacatacgctgaaatcaacgatcacctgccggacaacttcacc
gagaccgaggcgatcgaaggcatcatcagcacgtttaacgacatgggcgtggctgtctac
gagcaggcgcccgatgccgaaacgctgctgctgaacgacaacgctccggccgcttcgtcg
gacgacgaagtggaagaggaagccgaagtcgcgctctccaccgtcgactccgaattcggc
cgcacgaccgaccccgtccgcatgtacatgcgcgaaatgggcacggtcgagctgctcacg
cgtgaaggcgaaatcgagattgcgaagcggatcgaagacggcctgaagcacatggtgatg
gccatctccgcgtgcccgaccacgatcgccgacattctggccatggccgagcgcgtcgcg
aatgaggaaatccgcatcgacgaactggtcgacggcctgatcgacgccgacgcggaagac
gcggacggcttctcggtgcaggaagcggaagccatcgagagcgaagaagaggaagaagag
gaagaggacgaagaggacgaggaagaagacgacggcaccgcgcaggccacggccaacgca
gcgcaaatggaagcgctcaagcgtgcgtcgctcgaaaaatttgccctcatcagcgaatgg
ttcgacaagatgcgtcgcgcgttcgagaaggaaggctacaagtccaagtcctatctgaag
gcgcaggaaaccatccagaacgagctgatgacgatccgcttcaccgcgcgtaccgtcgag
cgtctgtgcgatacgttgcgcgcgcaagtggatgaagtgcgtcaggtcgagcgtcagatt
ctgcacaccgtcgtcgacaagtgcggcatgccgcgcgccgaatttatcgcgcgtttcccg
ggtagcgaaacggatctcgaatgggccgacaagatcgtcagcgaagggcatccgtatagc
gcgatcctcacgcggaacattccggccattcgcgagcagcaacaacgtctgctggatttg
caggcgcgtgtcgtgttgccgctgaaggacctgaaggaaaccaaccgtcagatggcggcc
ggcgaactgaaggcgcgtcaggcgaagcgcgaaatgaccgaggcgaatttgcgtctcgtg
atttcgattgcgaagaagtacacgaaccgcggtctgcagttcctcgatctgattcaggaa
ggcaacatcggcttgatgaaggcggtggacaagttcgaatatcgtcgtggctacaagttc
tccacgtatgcaacgtggtggattcgccaggccattacgcgttcgatcgcggaccaggcg
cgcaccatccgcattccggttcacatgatcgagacgatcaacaagatgaaccgcatctcg
cgtcagatcttgcaggaaaccggtctcgagccggacccggcaacgctggccgagaagatg
gaaatgccggaagacaagatccgcaagatcatgaagatcgcgaaagagccgatctccatg
gaaacgccgatcggtgacgacgacgattcgcatcttggcgacttcatcgaagacacgaac
acggtcgcgcccgcagacgccgcgttgcatgcaagcatgcgcgatgtcgtgaaagacgtg
ctcgactcgctgacgccgcgtgaagccaaggtgttgcgcatgcgtttcggtatcgagatg
agcactgaccacacgctcgaggaagtcggcaagcagttcgacgtcacgcgtgagcggatt
cgtcagatcgaggcgaaggcgctgcgcaagctgcgtcacccgagccggtccgacaagctg
aagtcgttccttgaaggcaactga
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