Puccinia graminis: PGTG_08245
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Entry
PGTG_08245 CDS
T02226
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase prp43
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
pgr
Puccinia graminis
Pathway
pgr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pgr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PGTG_08245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pgr03041
]
PGTG_08245
03009 Ribosome biogenesis [BR:
pgr03009
]
PGTG_08245
Enzymes [BR:
pgr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PGTG_08245
Spliceosome [BR:
pgr03041
]
Complex A
U2 snRNP components
U2 related factors
PGTG_08245
Complex B
PGTG_08245
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
PGTG_08245
Ribosome biogenesis [BR:
pgr03009
]
Eukaryotic type
90S particles
Helicases
PGTG_08245
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_19
AAA_22
SRP54
Flavi_DEAD
nSTAND3
AAA_23
Motif
Other DBs
NCBI-GeneID:
10534360
NCBI-ProteinID:
XP_003326415
UniProt:
E3KC21
LinkDB
All DBs
AA seq
750 aa
AA seq
DB search
MVAATDNPYLAHMEQSGALDGFIPRKLSGKQVLEAMDHPTNPFTGKKYSPQYKTILEQRK
ALPVFKQMADFYKMYNKSQFVVMEGETGSGKTTQIPQYAIYGDLPHMKNKQIACTQPRRV
AAMSVAKRVADEMDVKLGEEVGYSIRFEDCTSSKTILKYMTDGMLLREAMHDNTLSRYST
LVLDEAHERTLATDILMGLLKDIAKRRPDLKIVVMSATLDAAKFQSYFNSAPLLKVPGRT
FPVETFYTPEPEPDYLEAAIRTVLMIHRDEEPGDVLVFLTGEEEIEDACRKISIEADQLL
STSSLVGPLKCVPLYSSLPPQQQQRIFDPPPPPLTPNGPPGRKVVISTNIAETSLTIDGI
VYVIDPGFSKQKIYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTESSFVKE
LEDQTYPEILRSNLASVVLELKKLGVDDLVHFDYMDPPAPETVIRALELLNYLAAFDDEG
NLTPLGEIMAEFPLDPQLAKMLISSPEFKCSNEILSIAAMLSVPNPFLRPHNQRKEADDA
RAQFTHPEGDHLTLLNLYHGYKSSSDPNGWCWKNYVANRAMAQADNVRNQLKRTMERFDL
DLVSIDHKHKDYFKNIRMAVTTGYFMQVAHKEREKGVYTTRDGQIVGLHPSCGLDSSPEW
VLYNEFVLTTRNFIRICTEVKPEWLLDFAPLYYDVNTMPDGEAKRALQRIVIKKSNHASS
SSRRTENDQDPESKARKRQRKLDKKLKAEK
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
atggtcgctgcgacggataacccatacttggcccatatggaacagtcaggtgcactcgat
ggcttcatccctagaaagctatccggtaaacaggtcttggaggccatggatcaccccaca
aaccctttcaccggaaagaaatactccccacagtataaaaccattctagaacagcgcaag
gctttacccgtcttcaaacagatggcagatttttataagatgtacaacaagagccagttt
gtggttatggaaggtgaaacaggctcagggaaaacaactcaaattccacagtatgcgatc
tacggcgatcttcctcacatgaaaaacaagcagattgcttgtacgcaaccaagacgagta
gcagccatgagtgttgcaaagcgtgtggctgatgagatggacgtcaagcttggcgaagag
gtcggatacagcatccgattcgaagattgcaccagttcaaagacaattttgaagtacatg
accgatggtatgctgctccgagaggctatgcatgataataccctttcgcgttattcgacg
ttggtactcgacgaggctcatgaacgtacccttgcaaccgatatattgatgggtttgttg
aaagacattgcaaaacgccggcctgacttgaaaattgtcgtcatgtctgccactcttgac
gcggccaagttccaaagttatttcaattccgcaccactgctcaaggtccccggacggaca
ttcccggtcgaaacgttttatacgcctgagcctgaacccgattatctcgaagctgcgatc
cgtacagtcctgatgatccacagagatgaagaaccgggagatgtattggtcttcctcacc
ggtgaagaagaaattgaagacgcgtgtagaaagattagtatcgaagccgatcagcttctc
tctacttcctcgcttgtcggtccattgaaatgcgtaccactttactcatctctacctccc
caacaacaacaacggatctttgatccaccgccaccaccgcttactccaaatggacctccc
ggtcgaaaagttgtgatatcgacaaacatcgccgaaacctcattgacgatcgacgggatt
gtgtatgtgatcgacccaggattttcgaaacaaaagatttacaacccacgtattcgagtc
gaatctctgctagtctcacctatttcaaaagcttctgctcaacaacgtgccgggcgagcc
ggtcgtacacgacctgggaagtgcttcagattatacaccgagagcagttttgttaaggaa
ttagaagaccaaacctaccccgagatcttgcggtcgaacctagccagtgtggtactagaa
ttgaagaagttgggggtggacgatttggtccactttgactacatggatcctccagcaccc
gaaacagtcatcagagctttggaactgttgaactatttggctgcctttgatgatgagggg
aatctgaccccccttggggagatcatggccgaatttccgttggaccctcaattggctaag
atgttgatttctagcccggaattcaaatgtagtaatgaaatattgagtattgccgcaatg
ttgtctgtgcccaacccatttcttcgacctcacaatcagcgcaaggaagctgatgatgca
agggcgcaattcacccaccccgaaggtgatcatttgacgcttttgaacttataccatgga
tacaaatccagctccgatcccaatggctggtgttggaagaactacgttgccaacagagcg
atggcgcaagcggacaatgtgcgaaatcagttgaagaggacgatggaaaggttcgatctc
gacctcgtttccatcgatcataagcacaaggactatttcaagaacatccggatggctgtc
accactggttactttatgcaagtggcccataaagaacgtgagaagggcgtgtataccacc
agggatggtcagatcgtcggcttgcatcccagctgtggactcgatagtagtcccgaatgg
gtcctgtataatgagttcgtcttgactactcggaatttcatcaggatttgcacggaagtg
aagccggaatggttactagattttgcgccgttgtactacgatgtgaatacgatgccggat
ggagaagcgaaacgggcgttgcagagaatcgtgatcaagaaatctaatcatgcgtcttct
tcctctagacggactgaaaacgatcaggatccggagtctaaggctaggaaacgtcaacgc
aagttggacaaaaaattaaaggctgaaaaatag
DBGET
integrated database retrieval system
