Puccinia graminis: PGTG_10106
Help
Entry
PGTG_10106 CDS
T02226
Name
(RefSeq) small nuclear ribonucleoprotein
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
pgr
Puccinia graminis
Pathway
pgr03018
RNA degradation
pgr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pgr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PGTG_10106
09123 Folding, sorting and degradation
03018 RNA degradation
PGTG_10106
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgr03019
]
PGTG_10106
03041 Spliceosome [BR:
pgr03041
]
PGTG_10106
Messenger RNA biogenesis [BR:
pgr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
PGTG_10106
mRNA degradation factors
5'-3' decay
Lsm complex
PGTG_10106
Spliceosome [BR:
pgr03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
PGTG_10106
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
DUF150_C
FoP_duplication
Motif
Other DBs
NCBI-GeneID:
10545813
NCBI-ProteinID:
XP_003328805
UniProt:
E3KJB1
LinkDB
All DBs
AA seq
125 aa
AA seq
DB search
MADRGRGGRGGSGGNSRGRGGGRAGGDDKPKREAILDLAKFADKRVRVKFMGGREITGIL
KGYDQLLNLVMDEVEEILREPEGATVTSPPKTRSLGLAVIRGTSLVVINPVDGYEEIANP
FINQQ
NT seq
378 nt
NT seq
+upstream
nt +downstream
nt
atggcagatcgtggtcgaggcggacgtggagggtcaggagggaacagtcgaggaagaggt
ggcggacgagctgggggagatgacaagccgaaacgcgaagctatcctggatttggccaag
tttgccgacaaacgggttcgcgtcaagttcatgggaggtcgagagattaccggtattctc
aagggctatgatcagcttctaaatctggtgatggatgaggtcgaggagatccttcgcgaa
ccagagggtgctaccgtcacttcaccgccaaagacaagatcactaggactggcggttatc
agaggaactagtttggtggtcataaaccccgttgatggttacgaagaaattgcaaatccg
tttatcaatcaacagtaa
DBGET
integrated database retrieval system