Puccinia graminis: PGTG_11325
Help
Entry
PGTG_11325 CDS
T02226
Name
(RefSeq) hypothetical protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pgr
Puccinia graminis
Pathway
pgr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PGTG_11325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgr03019
]
PGTG_11325
03041 Spliceosome [BR:
pgr03041
]
PGTG_11325
03009 Ribosome biogenesis [BR:
pgr03009
]
PGTG_11325
03016 Transfer RNA biogenesis [BR:
pgr03016
]
PGTG_11325
Enzymes [BR:
pgr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PGTG_11325
Messenger RNA biogenesis [BR:
pgr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
PGTG_11325
Spliceosome [BR:
pgr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
PGTG_11325
Complex C
U4/U6.U5 tri-SnRNP related factors
PGTG_11325
Ribosome biogenesis [BR:
pgr03009
]
Eukaryotic type
Pre-60S particles
Helicases
PGTG_11325
Transfer RNA biogenesis [BR:
pgr03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
PGTG_11325
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
PHM7_cyt
DUF659
Motif
Other DBs
NCBI-GeneID:
10527137
NCBI-ProteinID:
XP_003329575
UniProt:
E3KLI1
LinkDB
All DBs
AA seq
1059 aa
AA seq
DB search
METSNNSKKRGPSSTTIATQPANLSSPKRSRVSSPSSDQQQQAKHERATKTLPSQQPVLV
ADEFQTEAARQIDASNGLLPEQPGTGEEKPQQLTLSHQVRHQVALPPNYNYIPISAHRAP
SKPARTYPFTLDPFQQVSITSIQRNESVLVSAHTSAGKTVVAEYAIAQCLENKQRVIYTS
PIKALSNQKYRELMAEFGDVGLMTGDVTINPSASCLVMTTEILRSMLYRGSEVMREVAWV
IFDEIHYMRDKERGVVWEETIILLPHSVRYVFLSATIPNAMQFAEWICHTHDQPCHVVYT
NFRPTPLQHYLFPSGGDGIHLVVDEKGVFREDNFLKAMGSLNDSRGEDPASSMSGRNKQG
KTKKGGNSTKGPSDIYKIIKMIMVKNYNPVIVFAFSKRECEALAIQMSKLEFNSEEEKET
VDTVFKNAISNLSEDDQALPQIEHILPLLKRGIGIHHGGLLPILKEVIEILFQEGLIKVL
FATETFSIGLNMPAKTVVFTTVRKFDGKDFRSLSSGEYIQMSGRAGRRGLDDRGIVIMMC
DEQLEPATAKNMVKGDADRLDSAFHLGYNMILNLMRVEGVSPEYMLEKCFFQFQTHANLP
LLENELRELQRMRSKIVVPDEESIADYAKLQEELEIRNQDFRDVINHPTHALPFLQPGRL
VKVKFGTMDFGWGCVVNFQRRLGDRGKSLGPETKPQDSFIVDVLLKISAGKSGPKQPPSK
MIGGNQTSLVKPCEPGEEGECAVVPVLLSTLDGISKIRIFLAQDLKPMDARKGALDAVAE
VKRRFPNGIGLLDPVENMGIVDETFKKLISRIENLKESIKDHKVITQEDFHDQYKLYQEK
QQVYQLIKQIKQKISNAENVIYIEDLKKRKTVLRSLGFCNVDDIVQVKGRVACEISSGDE
LLLTELIFNGAFNDLSPEQCAALLSCFVFTEKSEQITRLKNELEEPMKKMKEAAKKIAEE
IKSAGIDIKEEEYIDSFKTELMDVVFHWCKGSTFSEICKMTDIFEGSLIRCFRRLQELIR
QMSCAAKSIGNEELETKFTQSLDCLERPSSVVYNPSLYL
NT seq
3180 nt
NT seq
+upstream
nt +downstream
nt
atggaaaccagcaataatagcaagaaacgaggaccatcatcaacaaccatagccactcaa
cctgccaacttatcatcacccaaacggagcagagtcagttcgccatcatcagatcaacaa
caacaagctaaacatgaacgagccaccaagaccctcccaagccaacaaccagtgctagtg
gcagatgaatttcaaacggaagcagccaggcagatcgatgcaagcaatggactcctacca
gaacagcctggcacaggagaagagaaaccacaacaactaacactctcccatcaagttcgg
caccaagtggccctaccacccaattacaactacatccccatctcggcccatcgagctcca
agcaaaccggctaggacgtatcccttcacgctcgatcccttccaacaggtctcgatcacc
tcaatccaacgcaacgagagcgtactcgtctcagctcatactagtgctggtaagaccgtc
gtagccgaatatgctattgcccaatgtctcgaaaacaaacagagggtcatctacacctct
cctatcaaggctcttagtaatcaaaagtatcgtgaattgatggccgagtttggggatgtc
ggcttgatgactggggatgtgaccatcaatccaagtgcatcatgtctagtcatgacaact
gagattttacggtctatgttgtatcgtggctcagaagtaatgagagaagtggcttgggtg
atctttgatgaaattcattatatgcgcgacaaagaaagaggagtagtttgggaggagact
atcattcttttaccccattcggttcgatatgtattcctatcagccacaatacctaacgcg
atgcaatttgccgaatggatttgtcatacccacgatcaaccctgtcacgtagtttacacc
aacttcagaccaaccccattacagcactatttattcccatctggaggcgacggaatccat
ttggtcgtcgacgagaagggcgtctttcgcgaggataacttcttaaaagcgatgggctcc
ttgaacgattcgagaggtgaagatcctgcgagctcgatgtctggtcgaaacaagcagggc
aagaccaagaaaggcggcaactcgaccaaaggcccttcagatatctacaagatcatcaag
atgatcatggtcaagaattacaatccagtcatcgtcttcgcattctccaagagagagtgc
gaggctttagcgattcaaatgtccaagctagaattcaactcagaagaagaaaaagagaca
gtcgacacggtcttcaagaacgcgatctctaacttgtctgaagacgatcaagccttacca
cagatcgagcatatcttaccacttctgaaacgagggattgggatccatcatggtggtcta
ctgccgatcctcaaggaggtcatcgagatcctgttccaagaagggctgatcaaagtctta
ttcgctaccgaaaccttctcgatcggcttgaacatgccagccaaaactgtcgtcttcacc
accgtccgaaagttcgacgggaaagacttcaggagtttgagctcgggtgaatacattcaa
atgtctggacgagctggtcgtcgaggactggatgaccgagggatcgtcatcatgatgtgt
gatgaacaacttgaacccgctactgctaaaaatatggtaaagggtgacgccgatcgtttg
gattctgctttccacttgggatacaatatgattctcaatctgatgagagttgagggcgtc
agtcctgaatacatgctggaaaaatgtttctttcaatttcaaacacatgccaacttgccg
ctgttagaaaacgagctccgggagctccaaaggatgcgatcgaagatcgttgttccagat
gaagaatcaattgcggattatgccaagctacaagaagaactagaaatccgaaatcaagat
tttagggatgtgattaaccatccgacccatgcgcttcctttcctgcaaccaggaagatta
gttaaggtgaagtttggaacgatggattttggatggggatgtgtggtgaatttccaacga
agattaggggatcgaggaaaatcacttgggcctgagacaaaaccacaggacagcttcatt
gtcgacgtcctattgaagatctcagccgggaagtcgggtccgaagcagcctccctcgaag
atgattggtggtaaccaaacaagtctcgtcaaaccctgtgagccaggagaagagggtgaa
tgcgcggtcgttccggtcctcttatccactctggatgggatctcgaagatccgaatcttc
ctggcccaagatctgaaaccaatggatgctaggaaaggcgctctggacgcagttgcagaa
gtcaagcgaaggttccccaacggtatcggattgctcgacccggtcgaaaacatggggatc
gtcgatgagacgttcaagaaactgatcagccggatagagaacctgaaggagtcgattaag
gatcacaaagtgatcacccaagaagatttccacgaccagtataaactttaccaagaaaag
caacaagtatatcaactgatcaaacagatcaaacagaagatttcgaatgcggaaaatgtg
atttacatcgaagacttgaagaagcgcaagacggtactgaggagtctaggattttgtaac
gttgatgacatcgtgcaagtcaagggaagggtcgcatgtgaaatttcttccggagatgag
ctcctgttgaccgagttgatatttaatggcgcgttcaacgatctttctcccgaacaatgt
gcagccttactaagttgtttcgtgtttactgagaagagtgaacaaataacaagactgaag
aatgagcttgaggagcctatgaagaagatgaaagaggctgccaagaaaatcgccgaggag
atcaaatcagccggtatagatatcaaagaggaagaatatatcgattccttcaagaccgaa
ttgatggatgtcgtcttccattggtgtaaaggctcgacattttcggagatctgtaaaatg
accgacatattcgaaggatcgttgatcagatgcttccggagattgcaggaactgatccga
caaatgtcgtgtgcagccaagtcgataggaaatgaagagttggagaccaagttcacccag
tccctagattgcttggaacggccctccagtgtcgtctacaatccttctttgtatctctaa
DBGET
integrated database retrieval system
