Puccinia graminis: PGTG_13048
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Entry
PGTG_13048 CDS
T02226
Name
(RefSeq) hypothetical protein
KO
K07573
exosome complex component CSL4
Organism
pgr
Puccinia graminis
Pathway
pgr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PGTG_13048
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgr03019
]
PGTG_13048
Messenger RNA biogenesis [BR:
pgr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
PGTG_13048
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
PGTG_13048
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
RRP4_S1
ECR1_N_2
Motif
Other DBs
NCBI-GeneID:
10540928
NCBI-ProteinID:
XP_003331085
UniProt:
E3KQU1
LinkDB
All DBs
AA seq
198 aa
AA seq
DB search
MMISNPKTSSPSVIPGQELITSDESQPSATYQCGPGTFERQGKVYASVVGQPVRNAGTIS
VECSSRCAKVPVVGTIVIGMITKVTKPQAHVSIIMVDDLPLPVGQELQGAIRSQDVRQVD
KDKVIIWDCYRPGDIVRAEVISLPTSAMGYLLATFRNHLGVVFAQHSQTGNRMTAISWKE
MKDAETGQKEARKVAGPN
NT seq
597 nt
NT seq
+upstream
nt +downstream
nt
atgatgatctccaacccaaagacctccagtccatcagtcatccctggccaggagctaatc
acctcggatgagtctcaaccatcagcaacctatcaatgcggccctggcacattcgaaaga
caggggaaagtttacgcctccgttgtgggtcaacccgtaaggaatgcaggcacgatttca
gttgagtgttcttcacgatgcgcgaaggtacccgtggtgggaaccatcgttattgggatg
attaccaaggtgacgaaaccgcaagcacatgtgtcaatcataatggttgatgaccttcct
ttgcctgtcggtcaagagcttcaaggcgcaattcgatctcaggatgtgagacaagtggat
aaagataaagtaataatttgggattgttacagacctggagatatcgttcgagctgaagtg
atttcactgcctactagtgcaatggggtatctgttggcgacatttcggaatcatcttggc
gtcgttttcgcacagcattctcaaaccgggaaccgtatgacagcaatcagttggaaggaa
atgaaggatgccgaaacaggtcaaaaagaagcccgaaaagtagctggacctaactga
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