KEGG   Puccinia graminis: PGTG_20884
Entry
PGTG_20884        CDS       T02226                                 
Name
(RefSeq) hypothetical protein
  KO
K12627  U6 snRNA-associated Sm-like protein LSm8
Organism
pgr  Puccinia graminis
Pathway
pgr03018  RNA degradation
pgr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pgr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    PGTG_20884
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PGTG_20884
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pgr03019]
    PGTG_20884
   03041 Spliceosome [BR:pgr03041]
    PGTG_20884
Messenger RNA biogenesis [BR:pgr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     PGTG_20884
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     PGTG_20884
Spliceosome [BR:pgr03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    PGTG_20884
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 13542911
NCBI-ProteinID: XP_003890597
UniProt: H6QPF4
LinkDB
AA seq 149 aa
MLVDMSVLRLRHPANALMTSSIHPTGDTSHTRTTTQNIPPRRESWLVYTIPSGAQTSIHI
SQDKRVLVITQDGRTITGELKGFDQTTNIILSDSVERVYSSDEPMEEVPLGLYIVRGDHI
SVIGELDVEADAKIDWSSIRAEPLDEIRH
NT seq 450 nt   +upstreamnt  +downstreamnt
atgctcgtggacatgtctgtgctgcggctccggcatcccgcgaacgccctcatgacatct
tcaattcaccccacgggtgacaccagccacacacgaactacaactcaaaacatcccacct
agaagagaatcctggttggtatacactataccatcaggcgctcaaacctcaattcacatt
tcacaggataaacgtgtactagtcatcactcaggatggaaggactatcacgggtgaattg
aaaggcttcgatcaaacgacaaatatcatcttatcagattcagtggagcgggtttattca
tctgacgagcccatggaagaagtgcccttaggtctgtacattgttaggggcgatcacatc
tcggtgatcggcgaactggatgtagaagcggacgcaaaaatcgattggtcttcaatacgt
gctgaacctctagatgaaatacgacattag

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