Pedobacter ginsengisoli: CPT03_01565
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Entry
CPT03_01565 CDS
T05145
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pgs
Pedobacter ginsengisoli
Pathway
pgs03420
Nucleotide excision repair
pgs03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pgs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CPT03_01565
03430 Mismatch repair
CPT03_01565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pgs03400
]
CPT03_01565
Enzymes [BR:
pgs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CPT03_01565
DNA repair and recombination proteins [BR:
pgs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CPT03_01565
MMR (mismatch excision repair)
Other MMR factors
CPT03_01565
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
PcrA_UvrD_tudor
ResIII
AAA_12
AAA_11
DEAD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ATP55241
UniProt:
A0A2D1U0W1
LinkDB
All DBs
Position
complement(403899..406220)
Genome browser
AA seq
773 aa
AA seq
DB search
MDYLAGLNPQQRAAVENTQGPAMIVAGAGSGKTRVITYRVAHLIQKGVDPFNILVLTFTN
KASKDMRERIMKVVGPEAKNIWMGTFHSVFSKILRVEAEKIGYPSNFTIYDTDDSKSLIR
SILKELQLDDKLYNANFVYNRISSAKNNLVSYSEYLQSPEIQAEDISNKRPLMGSIYETY
TKRCFKAGAMDFDDLLFKTNVLLKNHPDVLNKYQQKFKYLMVDEYQDTNFSQYTIVKKLA
AAYQNICVVGDDAQSIYAFRGANIQNILNFERDYPDLQVYKLEQNYRSTQNIVEVANSII
ANNKNQLEKNVFSDNEAGDRIKVQRAFTDNEEGKLVAEAIVQDRSSNGLKFNDFAILYRT
NAQSRAMEEALRKLNIPYKIYGGLSFYQRKEIKDLIAYFRLTFNPSDEEAIKRVINYPRR
GLGDTTVEKIIVAADKHDITMWQVICNPQQYIEGRIANQLNDFAMLIQSFAAESKKLDAY
ETALYIAQHSGILKELHTDDSIEGRSRYENIQELLNGIKEFAEREDIEDRSLAIFMQDIA
LLTNDDRQDEKDKDTVSLMTIHSAKGLEFKNVFVVGLEENLFPSQMSLNSRTDLEEERRL
FYVAITRAEKKLTLTYATSRYRWGTLTNCEPSRFINEINARYLEIEVVKPAKSNLGQDSF
DNERRSWTQQRDSFSKPKPAMTSSSGTATGTSSPAARPKTTSLLPKAHVPTPGFAPDAAN
LFQNGMEVEHEKFGFGKIVNLEGTLPDVKATVFFQGLGNKQLLLKFAKLRIVK
NT seq
2322 nt
NT seq
+upstream
nt +downstream
nt
ttggattatttagcaggtttaaacccccaacaacgcgcagcagtagaaaacacacaaggc
ccggcaatgattgttgcaggtgctggctccggtaaaacgcgtgtaattacatatagagta
gcccatctgattcaaaaaggtgtggatccatttaatattcttgtacttacctttaccaat
aaggcatctaaagacatgcgcgagaggattatgaaagtagttggtccggaagctaaaaac
atctggatgggtacttttcactctgtgttctctaaaatattaagggttgaagctgaaaaa
attggttatccgtcgaactttacaatttatgatactgacgacagcaaaagtctgatcaga
tctatattgaaagagttgcagcttgacgacaaattgtacaacgccaactttgtttacaac
agaatctcatctgctaaaaacaacctggtttcttattctgagtatcttcagagtcctgaa
attcaggccgaagacattagcaataaacgccctttaatgggttccatttacgaaacatat
accaaacggtgctttaaagccggggcaatggattttgatgatttacttttcaaaaccaat
gttttgcttaaaaaccatccggatgtattaaataaataccagcagaaatttaaatacctg
atggttgatgagtaccaggataccaacttttcgcaatatacgattgtaaaaaaactggct
gctgcgtaccaaaacatatgtgttgtgggtgatgatgcacaaagtatttatgcttttagg
ggtgcaaatatccagaacatattaaactttgagcgcgattatcctgatttgcaggtgtat
aaattagagcagaactaccgctctacccaaaacattgttgaagttgcaaacagcatcatt
gcaaataacaaaaaccagcttgaaaagaacgttttctctgataatgaggctggcgacagg
attaaagttcaacgtgcgtttacagacaatgaggaaggtaaattagttgccgaagccatt
gttcaggaccgtagttcgaatggacttaaatttaacgattttgccattttatatagaaca
aatgcccaatcaagggctatggaggaggctttaagaaaacttaatattccttataaaata
tacggaggcctctccttctatcagcgtaaagagataaaagatttaattgcttacttccgc
ttaacctttaatccgagtgatgaggaggctataaaaagggtaatcaattaccctcgccgt
ggacttggagatactaccgttgaaaagatcatagttgctgccgataagcatgacatcacc
atgtggcaggtaatatgcaatccgcaacaatatatagaaggaaggatagcaaatcagttg
aatgattttgcaatgctgatacaaagctttgctgcagagtctaaaaaactggatgcttac
gaaaccgcactctatattgcacaacactctggcatattaaaagaattacataccgacgat
agtattgaaggccgtagccgatacgaaaacattcaggagttactaaatggtataaaagaa
tttgctgaacgtgaggatattgaggacaggagtcttgcaatttttatgcaggatattgct
ttattaaccaacgacgacagacaggatgaaaaagataaagatacggtttcgttaatgacc
atccactctgcaaaaggactggagtttaaaaacgtattcgttgttggcttggaagagaac
cttttcccatcacaaatgagtctgaactcgcgtactgatctggaggaagaacgtcgctta
ttttatgtggctataacaagggccgagaaaaagctgactttaacatatgctacttcaaga
taccgctggggaactttaacaaactgtgaaccaagcaggttcattaatgaaattaatgcc
cgttatttagaaattgaggttgtaaaacctgccaaaagcaatttaggacaggatagtttt
gataacgaacgcagaagctggacacagcaaagggatagctttagcaaaccaaaacctgcg
atgacaagttcgtcgggcactgcaacaggaacaagctctcctgctgcccgtccaaaaacc
acttcattgcttccaaaggctcacgtaccaactcctggttttgctccggatgctgctaat
ttgttccaaaatggcatggaagtagagcatgagaagtttggttttggtaaaattgttaat
ttagaaggcactttacctgatgtaaaagctactgtattttttcagggactgggtaataag
cagttattattaaaatttgctaaattgcgaattgttaaataa
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