KEGG   Pedobacter ginsengisoli: CPT03_03975
Entry
CPT03_03975       CDS       T05145                                 
Name
(GenBank) RNA polymerase sigma-70 factor
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
pgs  Pedobacter ginsengisoli
Pathway
pgs02020  Two-component system
Brite
KEGG Orthology (KO) [BR:pgs00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    CPT03_03975
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pgs03021]
    CPT03_03975
Transcription machinery [BR:pgs03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     CPT03_03975
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_r4 GerE HTH_40 Sigma70_ECF HTH_10 DUF722 HTH_5 PF0610-like_N DUF1492 HTH_24 DUF8108_N
Other DBs
NCBI-ProteinID: ATP55684
UniProt: A0A2D1U2F5
LinkDB
Position
943236..943811
AA seq 191 aa
MGNYSKHTDEELALLLKQAGPEIFKEIYDRYWDRLLNAAYKRVRNTETCEEIVQDVFTKL
WTNRASLVFTTGLGNYLYTAVRYNVIDHYRKHAVRESFISSEHAHIKLDNSTEEYVFLND
LKKHIDMMIAKLPDKCRSVYQLSRIEFKTNKEIATELNISEKTVEGHLTKALHSLRTTIA
DLMPILLFFLK
NT seq 576 nt   +upstreamnt  +downstreamnt
atggggaactattcaaaacatactgatgaagaactagccttgttgttaaaacaagctggc
cccgagatttttaaagaaatttacgatcggtattgggatagattacttaatgcagcctat
aaaagggttagaaacaccgaaacttgcgaagaaattgtacaggatgtttttacaaaactc
tggacaaacagggcttcgcttgtatttacaaccgggctgggtaattatctgtataccgct
gttaggtacaatgtgatagatcattatagaaaacacgccgtaagggagagttttatcagc
tccgaacacgctcatataaaacttgataattctacagaagaatatgtttttcttaacgat
ttgaaaaagcacattgatatgatgattgctaaactgcctgataaatgccgctctgtttat
caattaagcagaatcgagtttaaaacaaataaagaaattgcaactgagctgaatatctct
gaaaagactgtagaaggccatctaacaaaagcactacatagcttaagaacaacgattgcc
gaccttatgcccattttattattttttttaaaataa

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