Pedobacter ginsengisoli: CPT03_03975
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Entry
CPT03_03975 CDS
T05145
Name
(GenBank) RNA polymerase sigma-70 factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pgs
Pedobacter ginsengisoli
Pathway
pgs02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pgs00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
CPT03_03975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pgs03021
]
CPT03_03975
Transcription machinery [BR:
pgs03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CPT03_03975
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
GerE
HTH_40
Sigma70_ECF
HTH_10
DUF722
HTH_5
PF0610-like_N
DUF1492
HTH_24
DUF8108_N
Motif
Other DBs
NCBI-ProteinID:
ATP55684
UniProt:
A0A2D1U2F5
LinkDB
All DBs
Position
943236..943811
Genome browser
AA seq
191 aa
AA seq
DB search
MGNYSKHTDEELALLLKQAGPEIFKEIYDRYWDRLLNAAYKRVRNTETCEEIVQDVFTKL
WTNRASLVFTTGLGNYLYTAVRYNVIDHYRKHAVRESFISSEHAHIKLDNSTEEYVFLND
LKKHIDMMIAKLPDKCRSVYQLSRIEFKTNKEIATELNISEKTVEGHLTKALHSLRTTIA
DLMPILLFFLK
NT seq
576 nt
NT seq
+upstream
nt +downstream
nt
atggggaactattcaaaacatactgatgaagaactagccttgttgttaaaacaagctggc
cccgagatttttaaagaaatttacgatcggtattgggatagattacttaatgcagcctat
aaaagggttagaaacaccgaaacttgcgaagaaattgtacaggatgtttttacaaaactc
tggacaaacagggcttcgcttgtatttacaaccgggctgggtaattatctgtataccgct
gttaggtacaatgtgatagatcattatagaaaacacgccgtaagggagagttttatcagc
tccgaacacgctcatataaaacttgataattctacagaagaatatgtttttcttaacgat
ttgaaaaagcacattgatatgatgattgctaaactgcctgataaatgccgctctgtttat
caattaagcagaatcgagtttaaaacaaataaagaaattgcaactgagctgaatatctct
gaaaagactgtagaaggccatctaacaaaagcactacatagcttaagaacaacgattgcc
gaccttatgcccattttattattttttttaaaataa
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