Pedobacter ginsengisoli: CPT03_04900
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Entry
CPT03_04900 CDS
T05145
Name
(GenBank) DNA polymerase III subunit epsilon
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
pgs
Pedobacter ginsengisoli
Pathway
pgs03030
DNA replication
pgs03430
Mismatch repair
pgs03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pgs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CPT03_04900
03430 Mismatch repair
CPT03_04900
03440 Homologous recombination
CPT03_04900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pgs03032
]
CPT03_04900
03400 DNA repair and recombination proteins [BR:
pgs03400
]
CPT03_04900
Enzymes [BR:
pgs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CPT03_04900
DNA replication proteins [BR:
pgs03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CPT03_04900
DNA repair and recombination proteins [BR:
pgs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CPT03_04900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
GIY-YIG
DEDDh_C
DNA_pol_A_exo1
GIY_YIG_2
RNase_H_2
R2K_2
DUF3218
Motif
Other DBs
NCBI-ProteinID:
ATP55846
UniProt:
A0A2D1U2K7
LinkDB
All DBs
Position
complement(1200865..1202235)
Genome browser
AA seq
456 aa
AA seq
DB search
MLYAVVDIETTGGFASGNGITEISILIHDGVSVIDTFETLINPAREIPEYIQALTGISNE
MVMDAPVFNDIAPKIYELLHNKTFVAHNVNFDYSFVKHQLSLAGYQLQVNKLCTVRLSRK
ILPGHRSYSLGKLCTALGIEINNRHRAGGDATATAILFGMLLQADAEGIINQSLNKASKE
QVLPPNLPKSEIEKLPLNPGVYYFKDQKGKVIYIGKAKSIKKRVCSHFTGYSTTKQRQDF
LKDIYSIDFEVCGTELMAFILEASEIKKLWPANNRALKRFEQKYCLYTFEDQKGYLRLGI
DKFKKSVPVLYSFNTILEGHNLLKALIKEHLLCEKLCFIQKNRQACTAHQEGNCAGACVG
KESAAAYNVRVKYAIQDLKKMLPTFAVIDKGRTEDEQSCLLVEEGKFYGMGYISHHTDIN
APEELKSALQPYPSNDYILHMILSHAAQFPQKKIAI
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atgctttacgcggtagtagatatagaaacaacaggtggctttgcttcaggaaatggaatc
acagagatttcgatcttaattcatgatggtgtttcggtaattgatacttttgaaacacta
atcaatccggcacgggaaatacctgaatatatccaggcgttaacaggcataagcaatgaa
atggtaatggatgcacccgtgtttaacgacatagcaccaaaaatatatgaactattgcat
aacaaaaccttcgtagcccataatgtaaatttcgattactcctttgttaagcatcagtta
tcattagctggctatcagcttcaggtcaataaactttgtacggtaaggctaagtcgtaaa
atattaccagggcaccgttcttatagccttggtaaactttgtactgctttagggatagaa
ataaacaacaggcaccgcgcaggtggagatgctactgctacagcaattctatttggtatg
ctattacaagccgatgcagagggaattatcaaccaatctttaaataaggcttcaaaagaa
caggtgctacctcccaatttgccaaaatcagagatagaaaaactacctctaaaccctggt
gtgtattattttaaagaccaaaagggaaaagttatttacattggaaaagccaaaagtata
aaaaagcgtgtttgctcacattttacaggttatagcacaactaagcaacgtcaggatttc
cttaaagatatttacagtatagattttgaagtatgcggtacagagctgatggcctttatt
ttagaagcctctgaaataaaaaaattatggccggcaaacaatcgtgcattaaaacgtttt
gaacagaaatattgtctctataccttcgaagatcagaaaggctatttaagattaggtatt
gataagtttaagaaaagcgtacctgtcctatatagttttaatactatactggaaggacat
aatcttttaaaagcattaataaaagagcacttattatgtgaaaagctctgttttattcaa
aaaaacagacaggcctgcacagcccatcaagaaggtaactgtgctggtgcttgtgtgggt
aaagaatcggctgctgcttacaacgtacgggtcaaatatgccattcaggatctaaaaaaa
atgttgccaacttttgctgttattgacaaaggaagaactgaggatgaacaaagctgttta
cttgttgaagaaggaaaattctatggcatgggatacatttcacatcatactgatattaat
gcacctgaggagctaaaatcagctctgcaaccctacccttctaacgactatatacttcac
atgatactatctcatgccgcacaattcccccaaaagaaaatagcaatttaa
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