Pedobacter ginsengisoli: CPT03_07010
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Entry
CPT03_07010 CDS
T05145
Name
(GenBank) hypothetical protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pgs
Pedobacter ginsengisoli
Pathway
pgs03420
Nucleotide excision repair
pgs03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pgs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CPT03_07010
03430 Mismatch repair
CPT03_07010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pgs03400
]
CPT03_07010
Enzymes [BR:
pgs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CPT03_07010
DNA repair and recombination proteins [BR:
pgs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CPT03_07010
MMR (mismatch excision repair)
Other MMR factors
CPT03_07010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
AAA_30
SLFN-g3_helicase
AAA_11
UvrD_C_2
MA3
DUF3123
Motif
Other DBs
NCBI-ProteinID:
ATP56234
UniProt:
A0A2D1U3X3
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All DBs
Position
1718124..1719944
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AA seq
606 aa
AA seq
DB search
MEAFEQIKQCIEVNSSFVVEAGAGSGKTYALIQTLNYLIETKGEVLHTKKQNIVCITYTN
VAKNEIIKRIEYNDLVEVSTIHEFLWQSIKQFQKQLKIQLCKLNEIRLKIDETKGKETKY
IKNLNERINLVSEVFYNDSSFRDFEKGELHHDDVIELSKMLFKEYPLLTSIIAQKFPYIL
IDEYQDTSIETIEALIDCLLMRNKDKIILGFYGDSHQKIYDTGIGSLENYYEGENKVLRL
IKKEENYRSSRAVVDLLNNFRTNIKQEPKRDVDGSIKFIYWGNHPEKEPKQKVREFEDSL
KKFKNDFYEEVNHKLIGLGWDFSSNNLDKILVLANSRIADRAGFLKLYKIYSERYGQSTK
ERLLDRNHFLIKLFTGYIDKKTSQEREIGLEHLMTYWLENNHNKAIRFLRRNGTALHEFQ
HPKKKEISDILDDLSNNRNNKTVKEVLDVVLQKGIVYSKNYEEFISRIYQDLEGFDPEIK
EKIEKDKSFYESFINLSYSEIMNFWKHIQNETVFSTKHGTKGDEYRNVLTVIDDTEWKQE
YNFNNFFNNCDEKPERSLRTRNLFYVECSRAKENLVVLMLSKIEDDALANVRSWFGNKNV
VDIEQF
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atggaggcatttgagcaaataaagcaatgtattgaagttaattcaagctttgtggtggag
gctggtgcaggttctggaaaaacttatgcattaattcaaaccctgaattatttaatagaa
actaaaggagaggtattacatactaaaaaacaaaatatagtttgcattacttacacgaat
gttgctaaaaacgaaatcattaaacggattgaatataatgacttagttgaggtttctaca
attcatgagttcttatggcagtctatcaaacagtttcagaagcaattgaaaattcaactt
tgtaaacttaatgaaataagattaaaaattgatgaaactaaaggtaaggaaacaaaatac
attaaaaatctgaatgagcggattaatttagttagtgaagttttttacaacgattcttct
tttcgtgattttgaaaaaggtgaacttcatcatgacgacgtgattgagttgtcaaaaatg
ctttttaaagaatatccattattaacctctattatcgctcagaaatttccatatatttta
attgatgagtatcaggatacttcaatagaaacaattgaagctttaatagattgtttatta
atgcgtaataaagacaagataatccttggattttatggcgactctcatcaaaaaatttac
gatactggaatcggaagtcttgaaaattattatgaaggagaaaataaagtacttaggtta
atcaaaaaagaagaaaattatagatcgtcaagagctgtggttgatctacttaataacttt
agaacaaatattaaacaagaacccaaaagggatgtagacggatctataaaatttatttat
tggggaaatcatcctgaaaaagaacccaaacaaaaggttagagagtttgaagattcctta
aaaaagtttaaaaatgatttttatgaggaagtcaatcataaattgattgggttgggctgg
gatttcagtagcaataatttagataagattttagtgttagctaacagtagaattgcagat
agggctggatttttgaaattatataaaatttattctgaacgatatggtcaatcaacgaaa
gaacgacttttagatagaaatcattttctaattaagttgtttacaggatatattgataaa
aagacttctcaagaaagggagattggtttagaacatctgatgacttactggttggaaaat
aatcataataaagcgattagatttttaagaagaaatggaactgctttacatgaatttcag
catccaaagaaaaaagaaatatctgatatattagatgatttatccaataatagaaacaat
aaaacagtgaaagaagtattggatgttgttttgcaaaaagggattgtttattctaaaaat
tatgaagaatttatttctcgtatttatcaagatttggaaggctttgatccagaaatcaaa
gaaaaaattgaaaaggacaaatccttttatgagtcgtttataaatctttcatatagtgaa
attatgaacttttggaaacatattcaaaatgaaacagttttctcaactaaacatggaaca
aaaggagatgaatatagaaatgtattaactgtgattgatgacactgaatggaagcaagaa
tataattttaataatttctttaataattgtgacgaaaagcctgaaaggtcgttaagaact
cgtaatcttttttacgttgagtgttcaagagccaaagaaaatttagttgttttaatgtta
tctaaaattgaagatgatgctttagcaaatgttagaagttggtttgggaataagaatgtt
gttgatatagaacaattttaa
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