Pedobacter ginsengisoli: CPT03_07850
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Entry
CPT03_07850 CDS
T05145
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pgs
Pedobacter ginsengisoli
Brite
KEGG Orthology (KO) [BR:
pgs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pgs03032
]
CPT03_07850
03400 DNA repair and recombination proteins [BR:
pgs03400
]
CPT03_07850
Enzymes [BR:
pgs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
CPT03_07850
DNA replication proteins [BR:
pgs03032
]
Prokaryotic type
DNA Topoisomerases
CPT03_07850
DNA repair and recombination proteins [BR:
pgs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
CPT03_07850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
FGase
SPAR
Motif
Other DBs
NCBI-ProteinID:
ATP56391
UniProt:
A0A2D1U453
LinkDB
All DBs
Position
1900816..1903407
Genome browser
AA seq
863 aa
AA seq
DB search
MAKNLLIVESPAKAKTIEGYLGKDFLVKSSYGHIRDLIKGDMGIDISNNFAQTYEVPSDK
KQVVAELRKLAKEAEMVWLASDEDREGEAISWHLYETLGLKEAKTKRIVFHEITKPAILK
AIETPRTIDYNLVHAQQARRVLDRLVGFELSPVLWKKVKPSLSAGRVQSVAVRLIVDRER
EVNKFNASAAFKITAQFSTGKGKEIVRAELPQRFEKEADAEQFLTDCIDAGFAVDSLETK
PAKRNPAAPFTTSTLQQEASRKLGYSVSRTMQIAQRLYESGRITYMRTDSVNLSETALQA
AASEIKSAYGDKYHHLRVYKTKSAGAQEAHEAIRPTYFNHHTVPGDSSEQRLYELIWKRA
IASQMSEALFEKTTAQIGISTRKENLIAEGEVLKFDGFLKVYLESSDDDDLEDSEGNSML
PPLVRGQELTLKEMNATERFSRPPARYTEASLVKKLEELGIGRPSTYAPTISTIQNRGYV
VKEDRDGRQRSFSAIVLANGAIKKQIKTEITGAEKGKLFPTDIGEVVNDFLVEHFKGIVD
FNFTASVEKEFDEIAQGLQEWTKMLHSFYTPFHNEVETTLENADRANGERLLGVDPVSGK
NVYAKVGKFGPLVQIGQNDDEEKPRYASLSKSQSVATVTLENALEQFKLPFQLEDYEGKE
VSVGVGRFGPYVKWGDAYISVPKNEDPLSIDRDRAIEIIGEKITADAPVAHYQNLPVTKG
KGRFGPFIKWNDLFINVPKAYNFDNLKQSDIEELIGKKIEKEANRFIQQWAEEKIAIENG
RWGPFIRFGKEMLKLRKNPTTNDKYTQEELEVISLDEVKKLIVEQVPNAFEPKTKKAAAK
KTGTTAKKVTAKAPAKKKVAAKK
NT seq
2592 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagaatttactaatagttgagtcacctgcgaaagcgaaaaccatagaggggtat
ttgggtaaggattttcttgttaaatctagttacggtcacattcgtgacttgattaaggga
gatatgggaattgatatctctaataattttgctcaaacctacgaagtcccttcagataaa
aagcaagttgttgccgagttaagaaaactagctaaggaggccgaaatggtatggctagca
tccgatgaggaccgtgaaggagaagccatttcctggcatttgtacgaaactttaggactt
aaagaagccaaaacaaaacgtattgtttttcatgaaattaccaagcctgcaattttaaag
gctattgaaacaccccgtacaattgactataacctggttcatgcacaacaggcgcgccgc
gtgttagataggttggttggttttgaactttctccggtcttgtggaaaaaggttaaacca
tcactttcggcaggtcgggtacaatcagtagcagttcgtttaattgtagatagagaaaga
gaagtaaataaattcaatgcttcggcagcatttaaaataactgcacagttttcgaccgga
aaaggaaaggaaattgttagagcagaattgcctcagcgatttgaaaaagaagcagatgca
gagcagtttttaacagactgtattgatgctggtttcgcggttgatagtttagaaacgaag
cctgcaaaacgtaatcctgcagctccgtttaccacttctaccttacagcaagaagcttcc
cgcaaactgggttattcagtttcaaggacaatgcaaattgcgcaaagactgtatgaaagt
ggacgaatcacctatatgcgtaccgattcagtgaacttatcggaaacggcattacaggct
gcagcaagtgaaataaaatctgcttatggcgataaatatcaccacttaagggtatacaaa
actaaatcggcaggtgcacaagaggctcacgaagccatccgccctacttattttaatcat
catactgtaccaggcgacagttctgaacaacgtttatatgagttgatctggaaacgtgcc
atcgcttcacaaatgagtgaggctttatttgaaaaaacaaccgcccaaataggcatcagc
acgcgcaaagagaacttaattgccgagggtgaggttttaaaatttgatggtttcttaaag
gtttatcttgaatccagtgatgatgatgaccttgaggattcagaaggtaacagcatgttg
ccaccattggtaagaggtcaggaattgactttaaaagagatgaatgcaactgaacgtttc
tccagaccaccggccagatatacagaggcaagtttggttaaaaaactagaagagcttggt
attggaaggccatctacttacgcaccaacaatttcgaccatccaaaaccgcggttatgtg
gttaaagaagatcgtgatggccgtcagcgttcattcagtgctattgtattagccaatggt
gctatcaaaaaacaaattaaaactgaaataacaggtgcagaaaaaggcaagttgttccct
acagatataggagaagttgttaacgattttctggttgaacactttaagggaattgtagat
tttaactttacggcaagtgtagaaaaggaatttgatgagattgcgcaagggctgcaggaa
tggacaaagatgcttcactccttctatactcctttccataatgaggttgaaactacttta
gaaaatgccgacagggctaatggcgagcgtttattgggtgttgatccggtaagtggtaaa
aatgtttatgctaaggttggtaaatttggtccgttggtccaaattggtcagaatgacgac
gaagaaaaacctcgttatgcgagcttatctaaatcgcaatctgtggcaacggttacttta
gaaaatgctttggaacagtttaaactgcctttccaacttgaagattatgaaggtaaagag
gtttctgttggtgtaggtcgttttggtccttatgtcaaatggggtgatgcttacatctct
gttcctaaaaatgaagatcctttatcaattgacagagatcgtgcaatagagattattggc
gaaaaaattactgctgatgctccggttgcccattaccagaatttacctgttaccaaagga
aaaggacgattcgggccgtttattaaatggaacgatttgtttatcaatgtgcctaaggct
tataattttgataatctaaaacaatcggatattgaagagctgattggtaaaaaaatagaa
aaagaggccaataggtttatacagcagtgggctgaagaaaaaattgctatcgaaaatggc
cgatggggaccgtttattcgctttggtaaagaaatgcttaagttacgtaaaaatccgact
actaacgacaaatatactcaagaggaattagaggtaatttctttagatgaagttaaaaaa
ttgatagttgagcaggtgcctaacgcttttgaacctaaaaccaagaaagcagcagcaaag
aaaaccggtacaacggccaagaaagtaacagctaaagcgcctgcaaaaaagaaagttgca
gcgaagaagtag
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