Pedobacter ginsengisoli: CPT03_08285
Help
Entry
CPT03_08285 CDS
T05145
Name
(GenBank) IGHMBP2 family helicase
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
pgs
Pedobacter ginsengisoli
Brite
KEGG Orthology (KO) [BR:
pgs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pgs03009
]
CPT03_08285
03012 Translation factors [BR:
pgs03012
]
CPT03_08285
Enzymes [BR:
pgs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
CPT03_08285
5.6.2.5 RNA 5'-3' helicase
CPT03_08285
Ribosome biogenesis [BR:
pgs03009
]
Eukaryotic type
Other ribosome biogenesis factors
CPT03_08285
Translation factors [BR:
pgs03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
CPT03_08285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
AAA_30
AAA_19
Viral_helicase1
ResIII
UvrD-helicase
DEAD
PhoH
PIF1
Helicase_RecD
SLFN-g3_helicase
Herpes_ori_bp
nSTAND3
UvrD_C_2
AAA_22
T2SSE
AAA_25
AAA_16
HEM4
AAA_24
ATPase
SRP54
AAA_7
OmpH
AAA_5
NPHP3_N
DUF4088
MeaB
AAA
TraI_hel_assoc_N
DnaB_C
AAA_14
ATPase_2
Flavi_DEAD
UvrD_C
AAA_33
DUF1269
AAA_31
Fer4_NifH
GpA_ATPase
Pannexin_like
ABC_tran
Vma12
Motif
Other DBs
NCBI-ProteinID:
ATP56471
UniProt:
A0A2D1U4D8
LinkDB
All DBs
Position
complement(2017286..2019193)
Genome browser
AA seq
635 aa
AA seq
DB search
MEYFKKLLDLLKIERQEDLDSYLKLTASASVADRRENGLTWYPIAIRGSETGRGDYLTVV
VERTTHHDISHQLRFGASAVLFSNHDPKNDRVEGTISHQSGNKLKITLLTEELPDWASDG
KLGIDLLFDDNSYNEMQNALKLAQKPKDRVADSVLTEVLTGQKAPTFDASLTAVAVPQLN
PVQQKAVNKILQAQELAIVHGPPGTGKTTTLVQAIKALIANDGQKVLVVAPSNTAVDLLS
EKLAEEGLNVLRVGNPARVSERLVSLTMDSKIAGHSATKELRSLKKQANEYKNMAHKYKR
NFGKAEQEQRKALFNEAHKIMKEVNNAEQYIIDDVVAKAQVITATLIGANHYTVRDIKYK
TVVIDEAGQALEPACWVPILKAEKLVLAGDHCQLPPTIKSTQAAKEGLSNTLMEKCTLMH
SEAVVLLQEQYRMNTQIMGYPSLVFYNDQLTAHPNVAHGLLLTQEPPLEFVDTAGCGFEE
KLEGTSTTNPEEAVFLLKHLAQLVAKLTDHYTAANFPTIAIISPYKQQIRILNELITGSD
QLMIYKDKISINTIDSFQGQERDIVYIGLTRSNTDGAIGFLADTRRMNVAMTRARKKLVV
VGDSATLSRSEFYSGFISYAEKQNAYISAWEFVGF
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atggagtattttaaaaaactcctcgatttacttaaaattgagcgacaggaagacctcgat
tcttacctgaaacttaccgcatcggcttcggtagccgatcgtcgtgaaaacggattaaca
tggtatcctattgcaattcgtggatctgaaaccggtaggggcgattaccttacagttgtg
gttgaacgcactacccatcatgatatttcgcatcagcttaggtttggtgcatcggccgta
ttgttttctaatcacgatcctaaaaacgacagggttgaagggacaataagccaccagagc
gggaacaaacttaaaattacattactaacagaagaactgccagattgggccagcgatggc
aaattaggtatagatctgctgtttgatgacaacagctataatgaaatgcaaaatgcgctt
aaactggcgcaaaaaccaaaagatagagtagcggattctgttttaacagaagtattaaca
gggcaaaaagcacctacgtttgatgccagtttaacagctgttgcagtaccgcagttaaat
cctgttcagcaaaaagcagttaacaagattttgcaggcacaggaactggccatagttcac
ggcccaccgggaacaggtaaaacaaccacccttgtacaagccattaaggcgctaattgca
aatgatggacagaaggtacttgtggttgcaccaagtaatacagcggtagatctgttaagc
gaaaaactagctgaagaaggattgaatgtattgcgcgtggggaatccggcaagggtttct
gagcgtttggtatccttaactatggatagtaaaattgccgggcatagcgctaccaaagag
ctaagatcacttaaaaaacaggccaacgagtacaagaacatggcccataagtataagcgc
aattttggcaaggcagagcaggaacagcgcaaagcactgtttaacgaagcacacaaaata
atgaaagaggtgaacaatgcagagcaatacattattgatgatgttgtagcaaaagcccag
gtcattactgctaccttaattggtgccaaccactatacagttagagacattaaatataaa
actgttgtaattgatgaagccggacaggctttagaaccagcttgctgggtaccaatttta
aaggccgaaaagctggtgctggccggcgatcattgccagctgccaccaaccattaaatct
acacaggcagcaaaagaaggcttaagcaatacattaatggaaaaatgtaccttaatgcat
tcagaagctgtagttctactccaggagcaatacagaatgaatacgcagataatgggctac
ccatctttagtattctacaatgatcaattaaccgctcatcctaacgttgcacacggctta
ttgttaacccaggaaccaccgcttgaatttgtagataccgctggttgtggttttgaagaa
aaactggaaggaacaagtactaccaacccagaagaggccgtgtttttattaaaacattta
gcacaattggttgctaagctaactgatcattatacagcggctaattttcctacaatagcg
attatatcaccttataaacagcaaatccgtatacttaatgagctcattacagggtcagat
cagctaatgatatataaagataaaatcagcattaatactattgatagtttccaggggcaa
gagcgagacattgtgtacattggtctaaccagaagcaataccgatggtgcaataggcttt
ttagccgatacaagaaggatgaacgtagcaatgacgagagccagaaagaaactggttgtt
gttggcgatagtgctacactttccagatcagagttttattcgggctttatcagctatgca
gaaaagcaaaatgcctatataagcgcgtgggaatttgtcggtttttaa
DBGET
integrated database retrieval system
